<p>I upgraded to a dual Mk9 extruder, and quickly discovered how critical it is to get the ends of both nozzles exactly level with each other -- that is, equally distant from the build plate at all times. Otherwise the lower one will crash against the plastic just extruded by the higher one.</p>

<p>So, what's a good procedure for getting the nozzles accurately level? About all I've figure out is to move the heads down close to Z=0, and then run X and Y back and forth and eyeball and adjust; then move even closer to Z=0 and repeat. Is there a better / more efficient way?</p>

Make sure that the
bed is level
. As the saying goes, a level bed is next to godliness or something like that. Pay extra attention to the direction the nozzles are offset by (if one nozzle is offset on the X-axis, pay extra attention to the bed leveling along the X-axis).
This can be done with just one nozzle and a business card or piece of paper
.
Use a
bubble level
to get the nozzles about right. Move your z-axis up a bit and put a bubble level against the nozzles. Adjust as necessary so it's exactly level. The nozzles should be level enough that the bubble stays in the middle.
Fine-tune it with a
business card
. When you home the z- axis, you should be able to just fit a business card under both nozzles with a moderate amount of resistance. Don't force the card. If sliding the business card under produces a different amount of resistance for one nozzle than for another, adjust the nozzle a
tiny
amount. You can also use an index card or playing card.
Once it passes the card test, try a test print. If it doesn't work, make sure your bed is level, your nozzle offset is correct in the slicing software, and try calibrating with an index card again. If the nozzles become way off, try the bubble level again.
As for physically adjusting the level, another answer suggests shims made from aluminum foil, which work well. Personally, my extruder was off-level by almost exactly 1mm, so a pair of washers worked nicely for that.
Happy printing!
Leveling with a bubble: