<p>When go to export a model using Fusion 360 or Meshmixer, I see that there are two options. Could the final model be affected by the format chosen at the time of saving?</p>

<p><a href="https://i.stack.imgur.com/xIEXt.png" rel="noreferrer"><img src="https://i.stack.imgur.com/xIEXt.png" alt="enter image description here"></a></p>

I have experienced problems on occasion when using a binary exported Meshmixer model. The slicers used have been Simplify3D and Prusa Slicer 2.0 and possibly an earlier version. I've not attempted to resolve the problem other than to change that specific model to export to ASCII which then solves the problem. ASCII files will be larger but that's not a significant factor, in my opinion.
If you are using a program which fails to properly process a binary export, it's simple enough to overwrite the model in ASCII form.