<p>Is there a Maven archetype that will generate the same scaffolding as <code>maven-archetype-quickstart</code>, but will in addition create the basic project site layout generated by <code>maven-archetype-site</code>? Or do I always have to run each in sequence?</p>

I think
AppFuse
is very often the right tool to use when beginning a new Java project.
See the
QuickStart for samples.
I don't think the site will be generated from the initial AppFuse generation but a simple
```
mvn site
```
will create the basic web site.