<p>What tools do you know, other than those in Visual Studio, to analyze performance bottlenecks in a Windows CE/Mobile application? I'm looking for something like AQTime for CE/Mobile, to profile C/C++ applications compiled to native code.</p>

If you're doing .NET CF development, check out the
Power Toys for .NET CF 3.5
for utilities that can help you pinpoint bottlenecks, especially memory-related ones.