Instruct: Given a question, retrieve relevant documents that answer the question.
Query: Is cytoplasm needed for photosynthesis?
Like plants, the cyanobacteria use water as an electron donor for photosynthesis and therefore liberate oxygen; they also use chlorophyll as a pigment. In addition, most cyanobacteria use phycobiliproteins, water-soluble pigments which occur in the cytoplasm of the chloroplast, to capture light energy and pass it on to the chlorophylls. (Some cyanobacteria, the prochlorophytes, use chlorophyll b instead of phycobilin.) It is thought that the chloroplasts in plants and algae all evolved from cyanobacteria.
Like other cyanobacteria, these bacteria sometimes contain photosynthetic pigments in their cytoplasm to perform photosynthesis. The particular pigments they contain gives the cells a bluish-green color.
Floridean starch is a type of a storage glucan found in glaucophytes and in red algae (also known as rhodophytes), in which it is usually the primary sink for fixed carbon from photosynthesis. It is found in grains or granules in the cell's cytoplasm and is composed of an α-linked glucose polymer with a degree of branching intermediate between amylopectin and glycogen, though more similar to the former. The polymers that make up floridean starch are sometimes referred to as "semi-amylopectin".
Chlorophyll "a" is very important in the energy phase of photosynthesis. Two electrons need to be passed to an electron acceptor for the process of photosynthesis to proceed. Within the reaction centers of both photosystems there are a pair of chlorophyll "a" molecules that pass electrons on to the transport chain through redox reactions.
Most of the genes in the mitochondria code for respiration-related proteins, and most of the genes in the chloroplasts code for photosynthesis-related proteins. The cytoplasmic genome, in contrast with the nucleic genome, exists in many copies in each cell: each cell contains numerous mitochondria and/or chloroplasts, and each such organelle contains multiple copies of its chromosome.
Whereas photovoltaics can provide energy directly from sunlight, the inefficiency of fuel production from photovoltaic electricity (indirect process) and the fact that sunshine is not constant throughout the day sets a limit to its use. 
One way of using natural photosynthesis is for the production of a biofuel, which is an indirect process that suffers from low energy conversion efficiency (due to photosynthesis' own low efficiency in converting sunlight to biomass), the cost of harvesting and transporting the fuel, and conflicts due to the increasing need of land mass for food production. 
The purpose of artificial photosynthesis is to produce a fuel from sunlight that can be stored conveniently and used when sunlight is not available, by using direct processes, that is, to produce a solar fuel. With the development of catalysts able to reproduce the major parts of photosynthesis, water and sunlight would ultimately be the only needed sources for clean energy production. The only by-product would be oxygen, and production of a solar fuel has the potential to be cheaper than gasoline.
Photosynthesis converts light energy into chemical energy in the form of adenosine triphosphate (ATP). This occurs in the chloroplasts of plants cells. Light photons interact with various intermebrane proteins of the cholorplast to accomplish this. However, these proteins can become saturated with photons, making them unable to function until the saturation is alleviated. This is known as the Kautsky effect and is a cause of inefficiency on the ATP production mechanism. Cytoplasmic streaming in "Chara corallina", however, enables chloroplasts to move around the stem of the plant. Thus, the chloroplasts move into lighted regions and shaded regions. This intermittent exposure to photons due to cytoplasmic streaming actually increases the photosynthetic efficiency of chloroplasts. Photosynthetic activity is generally assessed using chlorophyll fluorescence analysis.
The cell achieves its height in the water column by synthesising gas vesicles. As the cell rises up, it is able to increase its carbohydrate load through increased photosynthesis. Too high and the cell will suffer photobleaching and possible death, however, the carbohydrate produced during photosynthesis increases the cell's density, causing it to sink. The daily cycle of carbohydrate build-up from photosynthesis and carbohydrate catabolism during dark hours is enough to fine-tune the cell's position in the water column, bring it up toward the surface when its carbohydrate levels are low and it needs to photosynthesis, and allowing it to sink away from the harmful UV radiation when the cell's carbohydrate levels have been replenished. An extreme excess of carbohydrate causes a significant change in the internal pressure of the cell, which causes the gas vesicles to buckle and collapse and the cell to sink out.
The glyoxylate reductase enzyme localizes to the cell cytoplasm in plants. It can use both NADPH and NADH as a cofactor, but prefers NADPH. The enzyme substrate, glyoxylate, is a metabolite in plant photorespiration, and is produced in the peroxisome. Glyoxylate is important in the plant cell as it can deactivate RUBISCO and inhibit its activation. Hence, glyoxylate levels are important in regulating photosynthesis.
Cytoplasmic–genetic male sterility systems are widely exploited in crop plants for hybrid breeding due to the convenience of controlling sterility expression by manipulating the gene–cytoplasm combinations in any selected genotype. Incorporation of these systems for male sterility evades the need for emasculation in cross-pollinated species, thus encouraging cross breeding producing only hybrid seeds under natural conditions.
Photosystems are functional and structural units of protein complexes involved in photosynthesis that together carry out the primary photochemistry of photosynthesis: the absorption of light and the transfer of energy and electrons. Photosystems are found in the thylakoid membranes of plants, algae and cyanobacteria. They are located in the chloroplasts of plants and algae, and in the cytoplasmic membrane of photosynthetic bacteria. There are two kinds of photosystems: II and I.
Parenchyma cells are living cells that have functions ranging from storage and support to photosynthesis (mesophyll cells) and phloem loading (transfer cells). Apart from the xylem and phloem in their vascular bundles, leaves are composed mainly of parenchyma cells. Some parenchyma cells, as in the epidermis, are specialized for light penetration and focusing or regulation of gas exchange, but others are among the least specialized cells in plant tissue, and may remain totipotent, capable of dividing to produce new populations of undifferentiated cells, throughout their lives. Parenchyma cells have thin, permeable primary walls enabling the transport of small molecules between them, and their cytoplasm is responsible for a wide range of biochemical functions such as nectar secretion, or the manufacture of secondary products that discourage herbivory. Parenchyma cells that contain many chloroplasts and are concerned primarily with photosynthesis are called chlorenchyma cells. Others, such as the majority of the parenchyma cells in potato tubers and the seed cotyledons of legumes, have a storage function.
The chlorarachniophytes are a small group of algae occasionally found in tropical oceans. They are typically mixotrophic, ingesting bacteria and smaller protists as well as conducting photosynthesis. Normally they have the form of small amoebae, with branching cytoplasmic extensions that capture prey and connect the cells together, forming a net. They may also form flagellate zoospores, which characteristically have a single subapical flagellum that spirals backwards around the cell body, and walled coccoid cells.
The corals that form the great reef ecosystems of tropical seas depend upon a symbiotic relationship with algae-like single-celled flagellate protozoa called zooxanthellae that live within their tissues and give the coral its coloration. The zooxanthellae provide the coral with nutrients through photosynthesis, a crucial factor in the clear and nutrient-poor tropical waters. In exchange, the coral provide the zooxanthellae with the carbon dioxide and ammonium needed for photosynthesis. Negative environmental conditions thwart the coral's ability to provide for the zooxanthellae's needs. To ensure short-term survival, the coral-polyp then expels the zooxanthellae. This leads to a lighter or completely white appearance, hence the term "bleached".[9] As the zooxanthellae provide up to 90% of the coral's energy needs through products of photosynthesis, after expelling, the coral may begin to starve.
Secretory products: Hormones, mucus, digestives enzymes, neurotransmitters, fibrous proteins, and hydrochloric acid are all different types of secretory products found in cytoplasmic inclusions. The cytoplasmic inclusions bound for secretion in some secretory cells are sometimes not visible by microscopy; some glands secrete products that are only released when needed by the body. An example of such glands is steroid-secreting endocrine gland.
Timeline of Photosynthesis on Earth 
Several groups of animals have formed symbiotic relationships with photosynthetic algae. These are most common in corals, sponges and sea anemones. It is presumed that this is due to the particularly simple body plans and large surface areas of these animals compared to their volumes. In addition, a few marine mollusks "Elysia viridis" and "Elysia chlorotica" also maintain a symbiotic relationship with chloroplasts they capture from the algae in their diet and then store in their bodies. This allows the mollusks to survive solely by photosynthesis for several months at a time. Some of the genes from the plant cell nucleus have even been transferred to the slugs, so that the chloroplasts can be supplied with proteins that they need to survive.
In plant cells, chloroplasts may be moved around with the stream, possibly to a position of optimum light absorption for photosynthesis. The rate of motion is usually affected by light exposure, temperature, and pH levels.
The genus contains species which show an evolutionary progression from  to photosynthesis. This, combined with it being very close to the Brassicaceae with the model plant species "Arabidopsis thaliana", makes it an ideal genus in which to study the evolution of photosynthesis. Morphological differences that demonstrate the transition from to include species having leaves with more veins and larger bundle sheath cells. Also, species such as "Cleome gynandra" produce proteins needed for photosynthesis. Three species independently acquired the pathway, while others are – intermediate or -like.
Chloroplasts and mitochondria are energy-converting organelles in the cytoplasm of eukaryotic cells. Chloroplasts in plant cells perform photosynthesis; the capture and conversion of the energy of sunlight. Mitochondria in both plant and animal cells perform respiration; the release of this stored energy when work is done. In addition to these key reactions of bioenergetics, chloroplasts and mitochondria each contain specialized and discrete genetic systems. These genetic systems enable chloroplasts and mitochondria to make some of their own proteins.
Gross primary production occurs by photosynthesis. This is also a main way that primary producers take energy and produce/release it somewhere else. Plants, coral, bacteria, and algae do this. Bacteria is a more recent find in the process of photosynthesis with primary producers, as they were just discovered in the soil. During photosynthesis, primary producers take energy from the sun and produce it into energy, sugar, and oxygen. Primary producers also need energy to convert this same energy elsewhere, so they get it from nutrients. One type of nutrient is nitrogen.
Genetic analysis showed that in the American coastal areas, the primary food of "M. rubra" is the algae most closely related to the free-living "Geminigera cryophila". But in Japanese coasts, the major algal species is "Teleaulax amphioxeia". When these plastid-containing algae are ingested by the ciliate, they are not digested. The plastids remain functional and provide nutrition to the ciliate by photosynthesis. In order for the plastids to be normally active, they still require enzymes, which are synthesised by the sequestered algal nuclei. The single nucleus can survive and remain genetically active up to 30 days in the cytoplasm of the ciliate. As the retention time of the prey nuclei is short, an average "M. rubra" cell may contain eight algal plastids per single prey nucleus and the nuclei need to be replaced by continuous feeding on fresh algae. Thus, the algal organelles are not permanently integrated.
Size is not the only factor in making red dwarfs potentially unsuitable for life, however. On a red dwarf planet, photosynthesis on the night side would be impossible, since it would never see the sun. On the day side, because the sun does not rise or set, areas in the shadows of mountains would remain so forever. Photosynthesis as we understand it would be complicated by the fact that a red dwarf produces most of its radiation in the infrared, and on the Earth the process depends on visible light. There are potential positives to this scenario. Numerous terrestrial ecosystems rely on chemosynthesis rather than photosynthesis, for instance, which would be possible in a red dwarf system. A static primary star position removes the need for plants to steer leaves toward the sun, deal with changing shade/sun patterns, or change from photosynthesis to stored energy during night. Because of the lack of a day-night cycle, including the weak light of morning and evening, far more energy would be available at a given radiation level.
Carbon dioxide is converted into sugars in a process called carbon fixation. Carbon fixation is an endothermic redox reaction, so photosynthesis needs to supply both the source of energy to drive this process and the electrons needed to convert into a carbohydrate. This addition of the electrons is a reduction reaction. In general outline and in effect, photosynthesis is the opposite of cellular respiration, in which glucose and other compounds are oxidized to produce and water, and to release exothermic chemical energy to drive the organism's metabolism. However, the two processes take place through a different sequence of chemical reactions and in different cellular compartments.
The epidermal cells of onions provide a protective layer against viruses and fungi that may harm the sensitive tissues. Because of their simple structure and transparency they are often used to introduce students to plant anatomy or to demonstrate plasmolysis.
The clear epidermal cells exist in a single layer and do not contain chloroplasts, because the onion fruiting body (bulb) is used for storing energy, not photosynthesis.
Each plant cell has a cell wall, cell membrane, cytoplasm, nucleus, and a large vacuole. The nucleus is present at the periphery of the cytoplasm. The vacuole is prominent and present at the center of the cell, surrounded by cytoplasm. 
Cytoplasmic streaming, also called protoplasmic streaming and cyclosis, is where there is flow inside the cytoplasm. It is typically observed in large plant and animal cells. Here flow means that the cytoplasm is moving inside the cell, it is not stationary. The flow is driven by forces from the cytoskeleton, and it is likely that the function of flow is at least partly to speed up transport of molecules and organelles around the cell. Cytoplasmic streaming is usually found in unusually large cells, greater than approximately 0.1 mm. In smaller cells, diffusion of molecules will be rapid but diffusion slows rapidly as the size increases, and so larger cells may need flow to move nutrients etc inside them rapidly enough for efficient function.