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README.md

@@ -51,8 +51,11 @@ task_ids:
 
 ### Dataset Summary
 
-MedQA Textbook (English) with focused emphasis on domain of Clinical Medicine and other subsets relevant for use with
-training medical LLMs with gold standard domain text.
+[MedQA](https://github.com/jind11/MedQA) includes "prepared text materials from a total of 18 English medical textbooks 
+that have been widely used by medical students and USMLE takers" [Jin, Di, et al. 2020].
+
+This dataset is derived from these medical textbooks (those in English), providing subsets that coincide with Medical 
+subspecialties for use in pre-training medical LLMs with gold standard domain text.
 
 ### Languages
 
@@ -80,9 +83,14 @@ valuable for pre-training of medical LLMS.
 #### Initial Data Collection and Normalization
 
 Langchain's RecursiveCharacterTextSplitter is used for chunking and the most commonly-appearing non-ASCII characters 
-are replaced with readable equivalents.   The texts are then broken into separate subsets: 
-
-- Core Clinical Medicine
-- Basic Biology
-- Pharmacology
-- Psychiatry
+are replaced with readable equivalents.   The textbooks are then broken into separate subsets, indicated below along with 
+the textbooks they comprise: 
+
+- _*Core Clinical Medicine*_
+  - Anatomy_Gray.txt, First_Aid_Step1.txt, First_Aid_Step2.txt, Immunology_Janeway.txt, InternalMed_Harrison.txt, Neurology_Adams.txt, Obstentrics_Williams.txt, Pathoma_Husain.txt, Pediatrics_Nelson.txt, and Surgery_Schwartz.txt 
+- _*Basic Biology*_
+  - Biochemistry_Lippincott.txt, Cell_Biology_Alberts.txt, Histology_Ross.txt, Pathology_Robbins.txt, and Physiology_Levy.txt 
+- _*Pharmacology*_
+  - Pharmacology_Katzung.txt 
+- _*Psychiatry*_
+  - Psichiatry_DSM-5.txt

medqa_corpus_en.py

@@ -156,15 +156,5 @@ class MedQACorpus(datasets.GeneratorBasedBuilder):
         ]
 
     def _generate_examples(self):
-        print(f"Generating examples in {self.base_dir} under {self.config.name}")
         for key, record in enumerate(get_med_qa_textbooks(self.base_dir, self.config.name)):
             yield key, record
-
-# if __name__ == '__main__':
-#     c = MedQACorpus()
-#     c.base_dir = Path('/home/chimezie/Projects/Oori/medical_llm/MedQACorpus/textbooks/en')
-#     c.config.name = "basic_biology"
-#     for k, r in c._generate_examples():
-#         print(k, r)
-#         break
-#