# encoding: UTF-8
# This file is auto-generated from the current content of the database. Instead
# of editing this file, please use the migrations feature of Seed Migration to
# incrementally modify your database, and then regenerate this seed file.
#
# If you need to create the database on another system, you should be using
# db:seed, not running all the migrations from scratch. The latter is a flawed
# and unsustainable approach (the more migrations you'll amass, the slower
# it'll run and the greater likelihood for issues).
#
# It's strongly recommended to check this file into your version control system.

# Ignore exceptions when appending to an HABTM association
def safe_habtm_append(model_associations, associated_model_instance_arr)
  begin
    model_associations << associated_model_instance_arr
  rescue ActiveRecord::RecordNotUnique => e
    SeedMigration::Migrator.logger.error e
  end
end

ActiveRecord::Base.transaction do

  AppConfig.create({"key"=>"launched_features", "value"=>"[\"bulk_downloads\",\"sample_type_free_text\",\"host_genome_free_text\",\"heatmap_filter_fe\",\"mass_normalized\",\"plqc\",\"consensus_genome\",\"cg_bulk_downloads\",\"nextclade\",\"appcues\",\"gen_viral_cg\",\"nanopore\",\"nanopore_v1\",\"cg_flat_list\",\"cg_appcues_help_button\",\"phylo_tree_ng\",\"improved_bg_model_selection\",\"landing_v2\",\"phylo_tree_appcue\",\"taxon_heatmap_presets\",\"blast\",\"annotation\",\"heatmap_pin_samples\",\"sorting_v0\",\"taxon_threshold_filter\",\"microbiome\",\"annotation_filter\",\"blast_v1\",\"pre_upload_check\",\"heatmap_elasticsearch\",\"samples_table_metadata_columns\",\"ont_v1\",\"bulk_deletion\",\"left_heatmap_filters\",\"amr_v3\",\"amr_v2\",\"amr_v1\",\"wgs_cg_upload\"]"})

  AppConfig.create({"key"=>"consensus-genome-version", "value"=>"3.5.1"})

  AppConfig.create({"key"=>"short-read-mngs-version", "value"=>"8.3.11"})

  AppConfig.create({"key"=>"phylotree-ng-version", "value"=>"6.11.0"})

  AppConfig.create({"key"=>"amr-version", "value"=>"1.4.2"})

  AppConfig.create({"key"=>"long-read-mngs-version", "value"=>"0.7.11"})

  AppConfig.create({"key"=>"sfn_single_wdl_arn", "value"=>"arn:aws:states:us-west-2:732052188396:stateMachine:idseq-swipe-dev-default-wdl"})

  AppConfig.create({"key"=>"enable_sfn_notifications", "value"=>"1"})

  AppConfig.create({"key"=>"sfn_arn", "value"=>"arn:aws:states:us-west-2:732052188396:stateMachine:idseq-swipe-dev-short-read-mngs-wdl"})

  AppConfig.create({"key"=>"sfn_mngs_arn", "value"=>"arn:aws:states:us-west-2:732052188396:stateMachine:idseq-swipe-dev-short-read-mngs-wdl"})

  AppConfig.create({"key"=>"sfn_cg_arn", "value"=>"arn:aws:states:us-west-2:732052188396:stateMachine:idseq-swipe-dev-default-wdl"})

  AppConfig.create({"key"=>"default_alignment_config_name", "value"=>"2024-02-06"})

  AppConfig.create({"key"=>"card_folder", "value"=>"card-3.2.6-wildcard-4.0.0"})

  AppConfig.create({"key"=>"max_objects_bulk_download", "value"=>"500"})

  AppConfig.create({"key"=>"max_samples_bulk_download_original_files", "value"=>"100"})

  AlignmentConfig.create({"diamond_db_path"=>nil, "index_dir_suffix"=>nil, "lineage_version"=>"2018-02-15", "lineage_version_old"=>1, "minimap2_long_db_path"=>nil, "minimap2_short_db_path"=>nil, "name"=>"2018-02-15", "s3_accession2taxid_path"=>"s3://idseq-public-references/alignment_data/2018-02-15-utc-1518652800-unixtime__2018-02-15-utc-1518652800-unixtime/accession2taxid.db", "s3_deuterostome_db_path"=>"s3://idseq-public-references/taxonomy/2018-02-15-utc-1518652800-unixtime__2018-02-15-utc-1518652800-unixtime/deuterostome_taxids.txt", "s3_lineage_path"=>"s3://idseq-public-references/taxonomy/2018-02-15-utc-1518652800-unixtime__2018-02-15-utc-1518652800-unixtime/taxid-lineages.db", "s3_nr_db_path"=>"s3://idseq-public-references/20170824/blast_db/nr", "s3_nr_loc_db_path"=>"s3://idseq-public-references/20170824/blast_db/nr_loc.db", "s3_nt_db_path"=>"s3://idseq-public-references/20170824/blast_db/nt", "s3_nt_info_db_path"=>nil, "s3_nt_loc_db_path"=>"s3://idseq-public-references/20170824/blast_db/nt_loc.db", "s3_taxon_blacklist_path"=>"s3://idseq-public-references/taxonomy/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/taxon_blacklist.txt"})

  AlignmentConfig.create({"diamond_db_path"=>nil, "index_dir_suffix"=>"2018-04-01", "lineage_version"=>"2018-04-01", "lineage_version_old"=>2, "minimap2_long_db_path"=>nil, "minimap2_short_db_path"=>nil, "name"=>"2018-04-01", "s3_accession2taxid_path"=>"s3://idseq-public-references/alignment_data/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/accession2taxid.db", "s3_deuterostome_db_path"=>"s3://idseq-public-references/taxonomy/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/deuterostome_taxids.txt", "s3_lineage_path"=>"s3://idseq-public-references/taxonomy/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/taxid-lineages.db", "s3_nr_db_path"=>"s3://idseq-public-references/alignment_data/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/nr", "s3_nr_loc_db_path"=>"s3://idseq-public-references/alignment_data/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/nr_loc.db", "s3_nt_db_path"=>"s3://idseq-public-references/alignment_data/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/nt", "s3_nt_info_db_path"=>nil, "s3_nt_loc_db_path"=>"s3://idseq-public-references/alignment_data/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/nt_loc.db", "s3_taxon_blacklist_path"=>"s3://idseq-public-references/taxonomy/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/taxon_blacklist.txt"})

  AlignmentConfig.create({"diamond_db_path"=>nil, "index_dir_suffix"=>"2018-12-01", "lineage_version"=>"2018-12-01", "lineage_version_old"=>3, "minimap2_long_db_path"=>nil, "minimap2_short_db_path"=>nil, "name"=>"2018-12-01", "s3_accession2taxid_path"=>"s3://idseq-public-references/alignment_data/2018-12-01/accession2taxid.db", "s3_deuterostome_db_path"=>"s3://idseq-public-references/taxonomy/2018-12-01/deuterostome_taxids.txt", "s3_lineage_path"=>"s3://idseq-public-references/taxonomy/2018-12-01/taxid-lineages.db", "s3_nr_db_path"=>"s3://idseq-public-references/alignment_data/2018-12-01/nr", "s3_nr_loc_db_path"=>"s3://idseq-public-references/alignment_data/2018-12-01/nr_loc.db", "s3_nt_db_path"=>"s3://idseq-public-references/alignment_data/2018-12-01/nt", "s3_nt_info_db_path"=>nil, "s3_nt_loc_db_path"=>"s3://idseq-public-references/alignment_data/2018-12-01/nt_loc.db", "s3_taxon_blacklist_path"=>"s3://idseq-public-references/taxonomy/2018-04-01-utc-1522569777-unixtime__2018-04-04-utc-1522862260-unixtime/taxon_blacklist.txt"})

  AlignmentConfig.create({"diamond_db_path"=>nil, "index_dir_suffix"=>"2021-01-22", "lineage_version"=>"2021-01-22", "lineage_version_old"=>8, "minimap2_long_db_path"=>nil, "minimap2_short_db_path"=>nil, "name"=>"2021-01-22", "s3_accession2taxid_path"=>"s3://idseq-public-references/alignment_data/2021-01-22-full-nr/accession2taxid.db", "s3_deuterostome_db_path"=>"s3://idseq-public-references/taxonomy/2021-01-22/deuterostome_taxids.txt", "s3_lineage_path"=>"s3://idseq-public-references/taxonomy/2021-01-22/taxid-lineages.db", "s3_nr_db_path"=>"s3://idseq-public-references/ncbi-sources/2021-01-22/nr", "s3_nr_loc_db_path"=>"s3://idseq-public-references/alignment_data/2021-01-22/nr_loc.db", "s3_nt_db_path"=>"s3://idseq-public-references/ncbi-sources/2021-01-22/nt", "s3_nt_info_db_path"=>"s3://idseq-public-references/alignment_data/2021-01-22/nt_info.db", "s3_nt_loc_db_path"=>"s3://idseq-public-references/alignment_data/2021-01-22/nt_loc.db", "s3_taxon_blacklist_path"=>"s3://idseq-public-references/taxonomy/2021-01-22/taxon_blacklist.txt"})

  AlignmentConfig.create({"diamond_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/diamond_index_chunksize_5500000000/", "index_dir_suffix"=>nil, "lineage_version"=>"2022-06-02", "lineage_version_old"=>nil, "minimap2_long_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nt_k14_w8_20_long/", "minimap2_short_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nt_k14_w8_20/", "name"=>"2022-06-02", "s3_accession2taxid_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/accession2taxid.marisa", "s3_deuterostome_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/deuterostome_taxids.txt", "s3_lineage_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/taxid-lineages.marisa", "s3_nr_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nr", "s3_nr_loc_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nr_loc.marisa", "s3_nt_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nt", "s3_nt_info_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nt_info.marisa", "s3_nt_loc_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/nt_loc.marisa", "s3_taxon_blacklist_path"=>"s3://czid-public-references/ncbi-indexes-prod/2022-06-02/index-generation-2/taxon_ignore_list.txt"})

  AlignmentConfig.create({"diamond_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/diamond_index_chunksize_5500000000/", "index_dir_suffix"=>nil, "lineage_version"=>"2024-02-06", "lineage_version_old"=>nil, "minimap2_long_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nt_k14_w8_20/", "minimap2_short_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nt_k14_w8_20/", "name"=>"2024-02-06", "s3_accession2taxid_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/accession2taxid.marisa", "s3_deuterostome_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/deuterostome_taxids.txt", "s3_lineage_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/taxid-lineages.marisa", "s3_nr_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nr_compressed_shuffled.fa", "s3_nr_loc_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nr_loc.marisa", "s3_nt_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nt_compressed_shuffled.fa", "s3_nt_info_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nt_info.marisa", "s3_nt_loc_db_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/nt_loc.marisa", "s3_taxon_blacklist_path"=>"s3://czid-public-references/ncbi-indexes-prod/2024-02-06/index-generation-2/taxon_ignore_list.txt"})

  Background.create({"description"=>nil, "mass_normalized"=>false, "name"=>"NID human CSF HC", "public_access"=>1, "ready"=>1, "user_id"=>nil})

  Background.create({"description"=>nil, "mass_normalized"=>false, "name"=>"NID Human CSF v3", "public_access"=>1, "ready"=>1, "user_id"=>nil})

  Background.create({"description"=>nil, "mass_normalized"=>true, "name"=>"test mass normalized bg default", "public_access"=>1, "ready"=>1, "user_id"=>nil})

  Citation.create({"footnote"=>"seeded-citation-7-18-23", "key"=>"seeded-citation-7-18-23"})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Human", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/human_telomere/2023-07-05/host-genome-generation-1/human_telomere.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/human_telomere/2023-07-05/host-genome-generation-1/human_telomere.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/human_telomere/2023-07-05/host-genome-generation-1/human_telomere.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/human/20230601/kallisto_idx/human.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/human_telomere/2023-07-05/host-genome-generation-1/human_telomere_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/human_telomere/2023-07-05/host-genome-generation-1/human_telomere_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/human_telomere/2023-07-05/host-genome-generation-1/human_telomere_STAR_genome.tar", "samples_count"=>7701, "skip_deutero_filter"=>0, "taxa_category"=>"human", "user_id"=>nil, "version"=>2})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Mosquito", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/mosquitos/2019-10-02/mosquito_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/mosquito/20221031/bowtie2_index_tar/mosquito.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/mosquito/20221031/hisat2_index_tar/mosquito.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/mosquito/20221031/kallisto_idx/mosquito.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/mosquitos/2019-10-02/mosquitos_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/mosquitos/2019-10-02/mosquitos_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/mosquito/20221031/original_transcripts_gtf_gz/Anopheles_gambiae.AgamP4.55.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/mosquitos/2019-10-02/mosquito_STAR_genome.tar", "samples_count"=>112, "skip_deutero_filter"=>1, "taxa_category"=>"insect", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Tick", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/tick/2023-04-26/host-genome-generation-1/tick_STAR_genome.tar", "samples_count"=>45, "skip_deutero_filter"=>0, "taxa_category"=>"insect", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"ERCC only", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/ercc/2017-09-01-utc-1504224000-unixtime__2017-09-01-utc-1504224000-unixtime/bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/ercc/20221031/bowtie2_index_tar/ercc.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/ercc/20221031/hisat2_index_tar/ercc.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/ercc/20221031/kallisto_idx/ercc.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/ercc/2017-09-01-utc-1504224000-unixtime__2017-09-01-utc-1504224000-unixtime/ercc_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/ercc/2017-09-01-utc-1504224000-unixtime__2017-09-01-utc-1504224000-unixtime/ercc_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/ercc/2017-09-01-utc-1504224000-unixtime__2017-09-01-utc-1504224000-unixtime/STAR_genome.tar", "samples_count"=>60, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Mouse", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/mouse/2018-08-10-utc-1518652800-unixtime__2018-08-10-utc-1518652800-unixtime/bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/mouse/20221031/bowtie2_index_tar/mouse.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/mouse/20221031/hisat2_index_tar/mouse.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/mouse/20221031/kallisto_idx/mouse.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/mouse/2018-08-10-utc-1518652800-unixtime__2018-08-10-utc-1518652800-unixtime/mouse_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/mouse/2018-08-10-utc-1518652800-unixtime__2018-08-10-utc-1518652800-unixtime/mouse_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/mouse/20221031/original_transcripts_gtf_gz/Mus_musculus.GRCm39.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/mouse/2018-08-10-utc-1518652800-unixtime__2018-08-10-utc-1518652800-unixtime/STAR_genome.tar", "samples_count"=>64, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

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  HostGenome.create({"default_background_id"=>26, "deprecation_status"=>nil, "name"=>"Pig", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/pig/2019-02-06/bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pig/20221031/bowtie2_index_tar/pig.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pig/20221031/hisat2_index_tar/pig.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pig/20221031/kallisto_idx/pig.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pig/2019-02-06/pig_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pig/2019-02-06/pig_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/pig/20221031/original_transcripts_gtf_gz/Sus_scrofa.Sscrofa11.1.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/pig/2019-02-06/STAR_genome.tar", "samples_count"=>212, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>26, "deprecation_status"=>nil, "name"=>"C.elegans", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/c.elegans/2019-02-19/bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/c.elegans/20221031/bowtie2_index_tar/c.elegans.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/c.elegans/20221031/hisat2_index_tar/c.elegans.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/c.elegans/20221031/kallisto_idx/c.elegans.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/c.elegans/2019-02-19/c.elegans_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/c.elegans/2019-02-19/c.elegans_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/c.elegans/20221031/original_transcripts_gtf_gz/Caenorhabditis_elegans.WBcel235.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/c.elegans/2019-02-19/STAR_genome.tar", "samples_count"=>15, "skip_deutero_filter"=>1, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Carp", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/carp/2019-04-17/bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/carp/20221031/bowtie2_index_tar/carp.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/carp/20221031/hisat2_index_tar/carp.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/carp/20221031/kallisto_idx/carp.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/carp/2019-04-17/carp_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/carp/2019-04-17/carp_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/carp/20221031/original_transcripts_gtf_gz/Cyprinus_carpio_carpio.Cypcar_WagV4.0.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/carp/2019-04-17/STAR_genome.tar", "samples_count"=>20, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Chicken", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/chicken/2019-04-18/bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/chicken/20221031/bowtie2_index_tar/chicken.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/chicken/20221031/hisat2_index_tar/chicken.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/chicken/20221031/kallisto_idx/chicken.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/chicken/2019-04-18/chicken_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/chicken/2019-04-18/chicken_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/chicken/20221031/original_transcripts_gtf_gz/Gallus_gallus.bGalGal1.mat.broiler.GRCg7b.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/chicken/2019-04-18/STAR_genome.tar", "samples_count"=>41, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Bee", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/bee/2023-03-31/host-genome-generation-1/bee.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/bee/20221031/bowtie2_index_tar/bee.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/bee/20221031/hisat2_index_tar/bee.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/bee/20221031/kallisto_idx/bee.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/bee/2023-03-31/host-genome-generation-1/bee_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/bee/2023-03-31/host-genome-generation-1/bee_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/bee/20221031/original_transcripts_gtf_gz/Anopheles_gambiae.AgamP4.55.gtf.gz", "s3_star_index_path"=>"s3://czid-public-references/host_filter/bee/2023-03-31/host-genome-generation-1/bee_STAR_genome.tar", "samples_count"=>17, "skip_deutero_filter"=>1, "taxa_category"=>"insect", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Salpingoeca rosetta", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/salpingoeca_rosetta/2019-05-13/s-rosetta_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/salpingoeca_rosetta/20221031/bowtie2_index_tar/salpingoeca_rosetta.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/salpingoeca_rosetta/20221031/hisat2_index_tar/salpingoeca_rosetta.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/salpingoeca_rosetta/20221031/kallisto_idx/salpingoeca_rosetta.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/salpingoeca_rosetta/2019-05-13/salpingoeca_rosetta_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/salpingoeca_rosetta/2019-05-13/salpingoeca_rosetta_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/salpingoeca_rosetta/20221031/original_transcripts_gtf_gz/Salpingoeca_rosetta_gca_000188695.Proterospongia_sp_ATCC50818.55.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/salpingoeca_rosetta/2019-05-13/s-rosetta_STAR_genome.tar", "samples_count"=>21, "skip_deutero_filter"=>1, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>26, "deprecation_status"=>nil, "name"=>"Bat", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/bat/2019-07-02/bat_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/bat/20221031/bowtie2_index_tar/bat.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/bat/20221031/hisat2_index_tar/bat.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/bat/20221031/kallisto_idx/bat.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/bat/2019-07-02/bat_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/bat/2019-07-02/bat_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/bat/2019-07-02/bat_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Rat", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/rat/2019-07-24/rat_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/rat/20221031/bowtie2_index_tar/rat.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/rat/20221031/hisat2_index_tar/rat.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/rat/20221031/kallisto_idx/rat.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/rat/2019-07-24/rat_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/rat/2019-07-24/rat_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/rat/20221031/original_transcripts_gtf_gz/Rattus_norvegicus.mRatBN7.2.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/rat/2019-07-24/rat_STAR_genome.tar", "samples_count"=>48, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Field Vole", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/field_vole/2019-07-24/field_vole_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/field_vole/20221031/bowtie2_index_tar/field_vole.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/field_vole/20221031/hisat2_index_tar/field_vole.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/field_vole/20221031/kallisto_idx/field_vole.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/field_vole/2019-07-24/field_vole_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/field_vole/2019-07-24/field_vole_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/field_vole/2019-07-24/field_vole_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Bank Vole", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/bank_vole/2019-07-24/bank_vole_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/bank_vole/20221031/bowtie2_index_tar/bank_vole.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/bank_vole/20221031/hisat2_index_tar/bank_vole.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/bank_vole/20221031/kallisto_idx/bank_vole.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/bank_vole/2019-07-24/bank_vole_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/bank_vole/2019-07-24/bank_vole_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/bank_vole/2019-07-24/bank_vole_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

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  HostGenome.create({"default_background_id"=>26, "deprecation_status"=>nil, "name"=>"Turkey", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/turkey/2019-09-30/turkey_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/turkey/20221031/bowtie2_index_tar/turkey.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/turkey/20221031/hisat2_index_tar/turkey.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/turkey/20221031/kallisto_idx/turkey.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/turkey/2019-09-30/turkey_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/turkey/2019-09-30/turkey_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/turkey/20221031/original_transcripts_gtf_gz/Meleagris_gallopavo.Turkey_5.1.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/turkey/2019-09-30/turkey_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Barred Hamlet", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/barred_hamlet/2019-12-17/barred_hamlet_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/barred_hamlet/20221031/bowtie2_index_tar/barred_hamlet.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/barred_hamlet/20221031/hisat2_index_tar/barred_hamlet.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/barred_hamlet/20221031/kallisto_idx/barred_hamlet.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/barred_hamlet/2019-12-17/barred_hamlet_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/barred_hamlet/2019-12-17/barred_hamlet_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/barred_hamlet/2019-12-17/barred_hamlet_STAR_genome.tar", "samples_count"=>10, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Orange Clownfish", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/orange_clownfish/2019-12-17/orange_clownfish_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/orange_clownfish/20221031/bowtie2_index_tar/orange_clownfish.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/orange_clownfish/20221031/hisat2_index_tar/orange_clownfish.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/orange_clownfish/20221031/kallisto_idx/orange_clownfish.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/orange_clownfish/2019-12-17/orange_clownfish_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/orange_clownfish/2019-12-17/orange_clownfish_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/orange_clownfish/20221031/original_transcripts_gtf_gz/Amphiprion_percula.Nemo_v1.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/orange_clownfish/2019-12-17/orange_clownfish_STAR_genome.tar", "samples_count"=>21, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

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  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Torafugu", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/torafugu/2019-12-17/torafugu_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/torafugu/20221031/bowtie2_index_tar/torafugu.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/torafugu/20221031/hisat2_index_tar/torafugu.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/torafugu/20221031/kallisto_idx/torafugu.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/torafugu/2019-12-17/torafugu_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/torafugu/2019-12-17/torafugu_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/torafugu/20221031/original_transcripts_gtf_gz/Takifugu_rubripes.fTakRub1.2.108.gtf.gz", "s3_star_index_path"=>"s3://idseq-public-references/host_filter/torafugu/2019-12-17/torafugu_STAR_genome.tar", "samples_count"=>12, "skip_deutero_filter"=>0, "taxa_category"=>"non-human-animal", "user_id"=>nil, "version"=>1})

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  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Madagascan Fruit Bat", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/madagascan_fruit_bat/2021-03-05/madagascan_fruit_bat_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/madagascan_fruit_bat/20221031/bowtie2_index_tar/madagascan_fruit_bat.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/madagascan_fruit_bat/20221031/hisat2_index_tar/madagascan_fruit_bat.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/madagascan_fruit_bat/20221031/kallisto_idx/madagascan_fruit_bat.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/madagascan_fruit_bat/2021-03-05/madagascan_fruit_bat_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/madagascan_fruit_bat/2021-03-05/madagascan_fruit_bat_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/madagascan_fruit_bat/2021-03-05/madagascan_fruit_bat_STAR_genome.tar", "samples_count"=>17, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Madagascan Rousettes", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/madagascan_rousettes/2021-03-05/madagascan_rousettes_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/madagascan_rousettes/20221031/bowtie2_index_tar/madagascan_rousettes.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/madagascan_rousettes/20221031/hisat2_index_tar/madagascan_rousettes.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/madagascan_rousettes/20221031/kallisto_idx/madagascan_rousettes.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/madagascan_rousettes/2021-03-05/madagascan_rousettes_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/madagascan_rousettes/2021-03-05/madagascan_rousettes_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/madagascan_rousettes/2021-03-05/madagascan_rousettes_STAR_genome.tar", "samples_count"=>456, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

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  HostGenome.create({"default_background_id"=>93, "deprecation_status"=>nil, "name"=>"Cicada", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/cicada/2021-07-28/cicada_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/cicada/20221031/bowtie2_index_tar/cicada.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/cicada/20221031/hisat2_index_tar/cicada.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/cicada/20221031/kallisto_idx/cicada.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/cicada/2021-07-28/cicada_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/cicada/2021-07-28/cicada_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/cicada/2021-07-28/cicada_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"European Woodmouse", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/european-woodmouse/2021-10-26/european-woodmouse_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/european-woodmouse/20221031/bowtie2_index_tar/european-woodmouse.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/european-woodmouse/20221031/hisat2_index_tar/european-woodmouse.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/european-woodmouse/20221031/kallisto_idx/european-woodmouse.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/european-woodmouse/2021-10-26/european-woodmouse_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/european-woodmouse/2021-10-26/european-woodmouse_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/european-woodmouse/2021-10-26/european-woodmouse_STAR_genome.tar", "samples_count"=>20, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Large Japanese Fieldmouse", "s3_bowtie2_index_path"=>"s3://idseq-public-references/host_filter/large-japanese-fieldmouse/2021-10-26/large-japanese-fieldmouse_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/large-japanese-fieldmouse/20221031/bowtie2_index_tar/large-japanese-fieldmouse.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/large-japanese-fieldmouse/20221031/hisat2_index_tar/large-japanese-fieldmouse.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/large-japanese-fieldmouse/20221031/kallisto_idx/large-japanese-fieldmouse.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/large-japanese-fieldmouse/2021-10-26/large-japanese-fieldmouse_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/large-japanese-fieldmouse/2021-10-26/large-japanese-fieldmouse_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://idseq-public-references/host_filter/large-japanese-fieldmouse/2021-10-26/large-japanese-fieldmouse_STAR_genome.tar", "samples_count"=>21, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

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  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Zebra Fish", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/2022-10-07/host-genome-generation-0/zebra_fish_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/zebra_fish/20221031/bowtie2_index_tar/zebra_fish.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/20221031/hisat2_index_tar/zebra_fish.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/20221031/kallisto_idx/zebra_fish.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/2022-10-07/host-genome-generation-0/zebra_fish_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/2022-10-07/host-genome-generation-0/zebra_fish_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/20221031/original_transcripts_gtf_gz/Danio_rerio.GRCz11.108.gtf.gz", "s3_star_index_path"=>"s3://czid-public-references/host_filter/zebra_fish/2022-10-07/host-genome-generation-0/zebra_fish_STAR_genome.tar", "samples_count"=>24, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Pea Aphid", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea_aphid_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea-aphid.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea-aphid.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea-aphid.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea_aphid_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea_aphid_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/pea-aphid/2022-12-02/pea-aphid_STAR_genome.tar", "samples_count"=>19, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Chelonia Mydas", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/chelonia_mydas/2023-01-09/host-genome-generation-0/chelonia_mydas_STAR_genome.tar", "samples_count"=>14, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Drosophila Melanogaster", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/drosophila_melanogaster/2023-01-19/host-genome-generation-0/drosophila_melanogaster_STAR_genome.tar", "samples_count"=>21, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Gray Whale", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale_bowtie2_genome.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale_minimap2_genome_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale_minimap2_genome_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/gray_whale/2023-01-20/host-genome-generation-0/gray_whale_STAR_genome.tar", "samples_count"=>14, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Vicugna pacos - Alpaca", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos_{nucleotide_type}.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos_{nucleotide_type}.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/vicugna_pacos/2023-03-01/host-genome-generation-1/vicugna_pacos_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Turkey Vulture", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/turkey_vulture/2023-04-17/host-genome-generation-1/turkey_vulture_STAR_genome.tar", "samples_count"=>16, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Sus scrofa - pig", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/sus_scrofa_landrace/2023-06-07/host-genome-generation-1/sus_scrofa_landrace_STAR_genome.tar", "samples_count"=>14, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Macaca fascicularis - crab-eating macaque", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/macaca_fascicularis/2023-06-08/host-genome-generation-1/macaca_fascicularis_STAR_genome.tar", "samples_count"=>14, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Macaca mulatta - Rhesus monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/macaca_mulatta/2023-06-08/host-genome-generation-1/macaca_mulatta_STAR_genome.tar", "samples_count"=>10, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Ovis aries - sheep", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/ovis_aries/2023-06-20/host-genome-generation-1/ovis_aries_STAR_genome.tar", "samples_count"=>12, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Bubalus bubalis - water buffalo", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/bubalus_bubalis/2023-06-20/host-genome-generation-1/bubalus_bubalis_STAR_genome.tar", "samples_count"=>12, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Arabidopsis thaliana - Thale cress", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/arabidopsis_thaliana/2023-10-04/host-genome-generation-1/arabidopsis_thaliana_STAR_genome.tar", "samples_count"=>19, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Columba livia - Rock pigeon", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/columba_livia/2023-10-04/host-genome-generation-1/columba_livia_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Pan troglodytes - chimpanzee", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/pan_troglodytes/2023-10-04/host-genome-generation-1/pan_troglodytes_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Gorilla gorilla", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/gorilla_gorilla/2023-10-04/host-genome-generation-1/gorilla_gorilla_STAR_genome.tar", "samples_count"=>17, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Pteropus vampyrus - large flying fox", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/pteropus_vampyrus/2023-10-04/host-genome-generation-1/pteropus_vampyrus_STAR_genome.tar", "samples_count"=>11, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Onchocerca volvulus", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/onchocerca_volvulus/2023-10-27/host-genome-generation-1/onchocerca_volvulus_STAR_genome.tar", "samples_count"=>16, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Buteo jamaicensis - red-tailed hawk", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/buteo_jamaicensis/2023-11-17/host-genome-generation-1/buteo_jamaicensis_STAR_genome.tar", "samples_count"=>14, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Biting Midge", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/biting_midge/2023-12-01/host-genome-generation-1/biting_midge_STAR_genome.tar", "samples_count"=>17, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Striped Dolphin", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/striped_dolphin/2023-12-01/host-genome-generation-1/striped_dolphin_STAR_genome.tar", "samples_count"=>16, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Common Bottlenose Dolphin", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/bottlenose_dolphin/2023-12-04/host-genome-generation-1/bottlenose_dolphin_STAR_genome.tar", "samples_count"=>18, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Olive baboon", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/olive_baboon/2024-02-20/host-genome-generation-1/olive_baboon_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Garden Lettuce", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/garden_lettuce/2024-03-05/host-genome-generation-1/garden_lettuce_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Watermelon", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/watermelon/2024-03-05/host-genome-generation-1/watermelon_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Papaya", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/papaya/2024-03-05/host-genome-generation-1/papaya_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Wild Cabbage", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/wild_cabbage/2024-03-05/host-genome-generation-1/wild_cabbage_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Musk Melon", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/muskmelon/2024-03-05/host-genome-generation-1/muskmelon_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Chinese Spinach", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/chinese_spinach/2024-03-05/host-genome-generation-1/chinese_spinach_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Salmo salar - Atlantic salmon", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/salmo_salar/2024-03-25/host-genome-generation-1/salmo_salar_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Riptortus pedestris - bean bug", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/riptortus_pedestris/2024-03-28/host-genome-generation-1/riptortus_pedestris_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Photinus pyralis - common eastern firefly", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/photinus_pyralis/2024-03-28/host-genome-generation-1/photinus_pyralis_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>0, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Oncorhynchus mykiss - rainbow trout", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/oncorhynchus_mykiss/2024-04-17/host-genome-generation-1/oncorhynchus_mykiss_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Lemur catta - ring-tailed lemur", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/lemur_catta/2024-04-23/host-genome-generation-1/lemur_catta_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Pan paniscus - bonobo", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/pan_paniscus/2024-04-23/host-genome-generation-1/pan_paniscus_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Rhinopithecus bieti - black snub-nosed monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/rhinopithecus_bieti/2024-05-01/host-genome-generation-1/rhinopithecus_bieti_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Gorilla beringei - eastern gorilla", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/gorilla_beringei/2024-05-01/host-genome-generation-1/gorilla_beringei_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Theropithecus gelada - gelada", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/theropithecus_gelada/2024-06-13/host-genome-generation-1/theropithecus_gelada_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Piliocolobus badius - western red colobus", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/piliocolobus_badius/2024-06-14/host-genome-generation-1/piliocolobus_badius_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Alouatta caraya - black howler monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/alouatta_caraya/2024-06-14/host-genome-generation-1/alouatta_caraya_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Alouatta palliata - mantled howler monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/alouatta_palliata/2024-06-14/host-genome-generation-1/alouatta_palliata_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Alouatta seniculus - howler monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/alouatta_seniculus/2024-06-14/host-genome-generation-1/alouatta_seniculus_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Ateles belzebuth - white-bellied spider monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/ateles_belzebuth/2024-06-14/host-genome-generation-1/ateles_belzebuth_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Ateles hybridus - brown spider monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/ateles_hybridus/2024-06-17/host-genome-generation-1/ateles_hybridus_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Cercopithecus ascanius - red-tailed monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/cercopithecus_ascanius/2024-06-17/host-genome-generation-1/cercopithecus_ascanius_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Colobus guereza - mantled guereza", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/mantled_guereza/2024-06-17/host-genome-generation-1/mantled_guereza_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Eulemur rubriventer - red-bellied lemur", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/eulemur_rubriventer/2024-06-17/host-genome-generation-1/eulemur_rubriventer_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Lagothrix lagotricha - brown woolly monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/lagothrix_lagotricha/2024-06-17/host-genome-generation-1/lagothrix_lagotricha_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Propithecus verreauxi - white sifaka", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/propithecus_verreauxi/2024-06-17/host-genome-generation-1/propithecus_verreauxi_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Cebus imitator - Panamanian white-faced capuchin", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/cebus_imitator/2024-06-17/host-genome-generation-1/cebus_imitator_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Leontopithecus Rosalia", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/leontopithecus_rosalia/2024-07-03/host-genome-generation-1/leontopithecus_rosalia_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Callithrix jacchus - white-tufted-ear marmoset", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/callithrix_jacchus/2024-07-03/host-genome-generation-1/callithrix_jacchus_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Presbytis comata - grizzled leaf monkey", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/presbytis_comata/2024-07-03/host-genome-generation-1/presbytis_comata_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Presbytis melalophos mitrata", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/pres_mela_mitr/2024-07-03/host-genome-generation-1/pres_mela_mitr_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  HostGenome.create({"default_background_id"=>nil, "deprecation_status"=>nil, "name"=>"Pongo abelii - Sumatran orangutan", "s3_bowtie2_index_path"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii.bowtie2.tar", "s3_bowtie2_index_path_v2"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii.bowtie2.tar", "s3_hisat2_index_path"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii.hisat2.tar", "s3_kallisto_index_path"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii.kallisto.idx", "s3_minimap2_dna_index_path"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii_dna.mmi", "s3_minimap2_rna_index_path"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii_rna.mmi", "s3_original_transcripts_gtf_index_path"=>nil, "s3_star_index_path"=>"s3://czid-public-references/host_filter/pongo_abelii/2024-07-03/host-genome-generation-1/pongo_abelii_STAR_genome.tar", "samples_count"=>0, "skip_deutero_filter"=>1, "taxa_category"=>"unknown", "user_id"=>nil, "version"=>1})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Type of sample or tissue", "display_name"=>"Sample Type", "examples"=>"{\"1\":[\"Bronchoalveolar lavage\",\"Cerebrospinal fluid\",\"Nasopharyngeal swab\",\"Plasma\",\"Stool\"],\"2\":[\"Head\",\"Whole Mosquito\",\"Abdomen\",\"Salivary Glands\",\"Midgut\"]}", "force_options"=>0, "group"=>"Sample", "is_core"=>1, "is_default"=>1, "is_required"=>1, "name"=>"sample_type", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"DNA or RNA", "display_name"=>"Nucleotide Type", "examples"=>"{\"all\":[\"DNA\",\"RNA\"]}", "force_options"=>1, "group"=>"Sample", "is_core"=>1, "is_default"=>1, "is_required"=>1, "name"=>"nucleotide_type", "options"=>"[\"DNA\", \"RNA\"]"})

  MetadataField.create({"base_type"=>2, "default_for_new_host_genome"=>1, "description"=>"Date sample was originally collected. For privacy reasons, only use month or year for human data in CZ ID.", "display_name"=>"Collection Date", "examples"=>"{\"all\":[\"2019-01-01\",\"2019-01\",\"01/01/19\",\"01/2019\"],\"1\":[\"2019-01\",\"01/2019\"]}", "force_options"=>0, "group"=>"Sample", "is_core"=>1, "is_default"=>1, "is_required"=>1, "name"=>"collection_date", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Location sample was originally collected. For privacy reasons, only use country, state, or county/sub-division for human data in IDseq.", "display_name"=>"Collection Location v1", "examples"=>"{\"all\":[\"California, USA\",\"Uganda\"]}", "force_options"=>0, "group"=>"Sample", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"collection_location", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Collecting institution/agency", "display_name"=>"Collected By", "examples"=>nil, "force_options"=>0, "group"=>"Sample", "is_core"=>1, "is_default"=>0, "is_required"=>0, "name"=>"collected_by", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Sex of the host", "display_name"=>"Host Sex", "examples"=>"{\"all\":[\"Male\",\"Female\"]}", "force_options"=>1, "group"=>nil, "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"host_sex", "options"=>"[\"Female\", \"Male\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Organism detected by a clinical lab", "display_name"=>"Known Organism", "examples"=>"{\"1\":[\"MRSA\",\"Staphylococcus aureus\",\"Influenza\",\"Hepatitis C\"],\"1\":[\"MRSA\",\"Staphylococcus aureus\",\"Influenza\",\"Hepatitis C\"]}", "force_options"=>0, "group"=>"Infection", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"known_organism", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Information on the class of the infection", "display_name"=>"Infection Class", "examples"=>"{\"all\":[\"Definite\",\"No infection\",\"Suspected\",\"Unknown\"]}", "force_options"=>1, "group"=>"Infection", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"infection_class", "options"=>"[\"Definite\", \"No Infection\", \"Suspected\", \"Unknown\", \"Water Control\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>nil, "display_name"=>"age", "examples"=>nil, "force_options"=>0, "group"=>nil, "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"age", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Information about infections at other sites", "display_name"=>"Other Infections", "examples"=>nil, "force_options"=>0, "group"=>"Infection", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"other_infections", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Whether or not the sample is a water control", "display_name"=>"Water Control", "examples"=>"{\"all\":[\"Yes\",\"No\"]}", "force_options"=>1, "group"=>"Sample", "is_core"=>1, "is_default"=>1, "is_required"=>1, "name"=>"water_control", "options"=>"[\"Yes\", \"No\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Whether or not the sample is an isolate", "display_name"=>"Isolate", "examples"=>"{\"all\":[\"Yes\",\"No\"]}", "force_options"=>1, "group"=>"Sample", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"isolate", "options"=>"[\"Yes\", \"No\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Diseases or conditions observed in the host", "display_name"=>"Diseases and Conditions", "examples"=>"{\"all\":[\"Meningoencephalitis\",\"Sepsis\",\"Interstitial pneumonia\",\"Tracheitis with inclusion bodies\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"diseases_and_conditions", "options"=>nil})

  MetadataField.create({"base_type"=>3, "default_for_new_host_genome"=>1, "description"=>"Location sample was originally collected. For privacy reasons, only use country, state, or county/sub-division for human data in CZ ID. If you enter a more specific location (e.g. city-level), we will only save up to the county-level information.", "display_name"=>"Collection Location", "examples"=>nil, "force_options"=>0, "group"=>"Sample", "is_core"=>1, "is_default"=>1, "is_required"=>1, "name"=>"collection_location_v2", "options"=>nil})

  MetadataField.create({"base_type"=>1, "default_for_new_host_genome"=>1, "description"=>"The number of cycles required for the fluorescent signal to cross the background fluorescent threshold during qPCR. The value is inversely proportional to the amount of target nucleic acid.", "display_name"=>"Ct Value", "examples"=>"{\"all\":[\"8\",\"14\",\"27\"]}", "force_options"=>0, "group"=>"Infection", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"ct_value", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Unique identifier for the host (e.g. for multiple samples from the same host)", "display_name"=>"Host ID", "examples"=>"{\"all\":[\"743\",\"PD-445\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"host_id", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Race/ethnicity of the host", "display_name"=>"Host Race/Ethnicity", "examples"=>"{\"1\":[\"Caucasian\",\"Asian\",\"African American\",\"American Indian\",\"Pacific Islander\"],\"1\":[\"Caucasian\",\"Asian\",\"African American\",\"American Indian\",\"Pacific Islander\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"host_race_ethnicity", "options"=>"[\"White\", \"Hispanic\", \"Black\", \"Asian\", \"Other\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Diagnosed disease that resulted in hospital admission", "display_name"=>"Primary Diagnosis", "examples"=>"{\"1\":[\"Severe fever\",\"Pneumonia\",\"Septic shock during blood transfusion\"],\"1\":[\"Severe fever\",\"Pneumonia\",\"Septic shock during blood transfusion\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"primary_diagnosis", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Information on antibiotics administered to the host", "display_name"=>"Antibiotic Administered", "examples"=>"{\"1\":[\"Septrin\",\"Penicillin\",\"Eftriaxone\"],\"1\":[\"Septrin\",\"Penicillin\",\"Eftriaxone\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"antibiotic_administered", "options"=>"[\"Yes\", \"No\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Information on if the host was immunocompromised", "display_name"=>"Immunocompromised", "examples"=>"{\"1\":[\"Host has HIV/AIDS\",\"Host has taken immunosuppressant drugs\"],\"1\":[\"Host has HIV/AIDS\",\"Host has taken immunosuppressant drugs\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"immunocomp", "options"=>"[\"Yes\", \"No\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Detection method for the known organism", "display_name"=>"Detection Method", "examples"=>"{\"all\":[\"PCR\",\"Plate cultures\",\"Agar slant\",\"Antigen testing\"]}", "force_options"=>0, "group"=>"Infection", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"detection_method", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Information on other chronic diseases present (e.g. HIV, Diabetes, COPD, etc.)", "display_name"=>"Comorbidity", "examples"=>"{\"1\":[\"HIV\",\"Diabetes\",\"Asthma\",\"Cancer\",\"Cardiovascular disease\",\"COPD\"],\"1\":[\"HIV\",\"Diabetes\",\"Asthma\",\"Cancer\",\"Cardiovascular disease\",\"COPD\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"comorbidity", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Library prep kit information", "display_name"=>"Library Prep", "examples"=>"{\"all\":[\"NEB Ultra II FS DNA\",\"NEB Ultra II Directional RNA\",\"Nextera DNA\"]}", "force_options"=>0, "group"=>"Sequencing", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"library_prep", "options"=>"[\"NEB Ultra II FS DNA\", \"NEB RNA Ultra II\", \"NEB Ultra II Directional RNA\", \"NEB Utra II DNA\", \"Nextera DNA\", \"Other\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Sequencer information", "display_name"=>"Sequencer", "examples"=>"{\"all\":[\"Illumina MiSeq\",\"Illumina HiSeq 2500\",\"Illumina NextSeq 500\"]}", "force_options"=>0, "group"=>"Sequencing", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"sequencer", "options"=>"[\"MiSeq\", \"NextSeq\", \"HiSeq\", \"NovaSeq\", \"Other\"]"})

  MetadataField.create({"base_type"=>1, "default_for_new_host_genome"=>1, "description"=>"RNA/DNA input in nanograms", "display_name"=>"RNA/DNA Input (ng)", "examples"=>"{\"all\":[\"20\",\"30\"]}", "force_options"=>0, "group"=>"Sequencing", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"rna_dna_input", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Life stage of the specimen", "display_name"=>"Host Life Stage", "examples"=>"{\"all\":[\"Larva\",\"Nymph\",\"Adult\"]}", "force_options"=>1, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"host_life_stage", "options"=>"[\"Larva\", \"Nymph\", \"Adult\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Preservation method of the specimen", "display_name"=>"Preservation Method", "examples"=>"{\"2\":[\"TEA\",\"Frozen\",\"CO2\",\"Dried\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"preservation_method", "options"=>"[\"TEA\", \"Freeze\", \"CO2\", \"Dried\", \"Other\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Trap type used on the specimen", "display_name"=>"Trap Type", "examples"=>"{\"2\":[\"BG-Sentinel\",\"Gravid\",\"CDC light trap\",\"EVS/CO2\",\"Fay-Prince\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"trap_type", "options"=>"[\"BG-Sentinel\", \"Gravid\", \"CDC Light Trap\", \"EVS/CO2\", \"Fay-Prince\", \"Other\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>1, "description"=>"Genus/species of the mosquito", "display_name"=>"Host Genus Species", "examples"=>"{\"2\":[\"Aedes aegypti\",\"Culex erythrothorax\",\"Aedes sierrensis\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"host_genus_species", "options"=>"[\"Aedes aegypti\", \"Culex erythrothorax\", \"Aedes sierrensis\", \"Anopheles punctipennis\", \"Anopheles freeborni\", \"Culex tarsalis\", \"Culex pipiens\", \"Aedes albopictus\", \"Other\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Information about the mosquito's blood feeding", "display_name"=>"Blood Fed", "examples"=>"{\"all\":[\"Yes\",\"No\",\"Partially\",\"Mixed\",\"Unknown\"]}", "force_options"=>1, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"blood_fed", "options"=>"[\"Unfed\", \"Partially Blood Fed\", \"Blood Fed\", \"Gravid\", \"Gravid and Blood Fed\"]"})

  MetadataField.create({"base_type"=>1, "default_for_new_host_genome"=>0, "description"=>"Number of mosquitoes in the sample that was sequenced", "display_name"=>"Sample Unit", "examples"=>"{\"2\":[\"1\",\"10\"]}", "force_options"=>0, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"sample_unit", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"ID for the specimen (in case of multiple samples from the same specimen)", "display_name"=>"Unique ID", "examples"=>nil, "force_options"=>0, "group"=>"Sample", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"unique_id", "options"=>nil})

  MetadataField.create({"base_type"=>1, "default_for_new_host_genome"=>0, "description"=>"Latitude of the original collection location", "display_name"=>"Collection Latitude", "examples"=>nil, "force_options"=>0, "group"=>"Sample", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"collection_lat", "options"=>nil})

  MetadataField.create({"base_type"=>1, "default_for_new_host_genome"=>0, "description"=>"Longitude of the original collection location", "display_name"=>"Collection Longitude", "examples"=>nil, "force_options"=>0, "group"=>"Sample", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"collection_long", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Computationally-determined genus of the specimen", "display_name"=>"Computed Genus", "examples"=>nil, "force_options"=>0, "group"=>"Host", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"comp_id_genus", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Computationally-determined species of the specimen", "display_name"=>"Computed Species", "examples"=>nil, "force_options"=>0, "group"=>"Host", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"comp_id_species", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Reported/expected/human-identified genus of the specimen", "display_name"=>"Reported Genus", "examples"=>nil, "force_options"=>0, "group"=>"Host", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"reported_id_genus", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Reported/expected/human-identified species of the specimen", "display_name"=>"Reported Species", "examples"=>nil, "force_options"=>0, "group"=>"Host", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"reported_id_species", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Reported/expected/human-identified species of the specimen", "display_name"=>"Reported Sex", "examples"=>nil, "force_options"=>0, "group"=>"Host", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"reported_sex", "options"=>"[\"Female\", \"Male\"]"})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Identification method used", "display_name"=>"Identification Method", "examples"=>nil, "force_options"=>0, "group"=>"Host", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"id_method", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Label for the extracted batch", "display_name"=>"Extraction Batch", "examples"=>nil, "force_options"=>0, "group"=>"Sequencing", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"extraction_batch", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Number given to library preparation from a group of samples", "display_name"=>"Library Prep Batch", "examples"=>nil, "force_options"=>0, "group"=>"Sequencing", "is_core"=>0, "is_default"=>0, "is_required"=>0, "name"=>"library_prep_batch", "options"=>nil})

  MetadataField.create({"base_type"=>0, "default_for_new_host_genome"=>0, "description"=>"Whether or not the host(s) were gravid", "display_name"=>"Gravid", "examples"=>"{\"2\":[\"Yes\",\"No\",\"Mixed\",\"Unknown\"]}", "force_options"=>1, "group"=>"Host", "is_core"=>1, "is_default"=>1, "is_required"=>0, "name"=>"gravid", "options"=>"[\"Yes\", \"No\", \"Mixed\", \"Unknown\"]"})

  SampleType.create({"group"=>"Systemic Inflammation", "human_only"=>false, "insect_only"=>false, "name"=>"Plasma"})

  SampleType.create({"group"=>"Systemic Inflammation", "human_only"=>false, "insect_only"=>false, "name"=>"Serum"})

  SampleType.create({"group"=>"Systemic Inflammation", "human_only"=>false, "insect_only"=>false, "name"=>"Whole Blood"})

  SampleType.create({"group"=>"Central Nervous System", "human_only"=>false, "insect_only"=>false, "name"=>"Brain"})

  SampleType.create({"group"=>"Central Nervous System", "human_only"=>true, "insect_only"=>false, "name"=>"Cerebrospinal Fluid"})

  SampleType.create({"group"=>"Central Nervous System", "human_only"=>false, "insect_only"=>false, "name"=>"CNS Tissue"})

  SampleType.create({"group"=>"Central Nervous System", "human_only"=>true, "insect_only"=>false, "name"=>"Ocular Fluid"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>false, "insect_only"=>false, "name"=>"Lung"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Bronchoalveolar Lavage"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Nasopharyngeal Swab"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Mini Bronchoalveolar Lavage"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Oralpharyngeal Swab"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Saliva"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Sputum"})

  SampleType.create({"group"=>"Respiratory Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Tracheal Aspirate"})

  SampleType.create({"group"=>"Reproductive Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Amniotic Fluid"})

  SampleType.create({"group"=>"Reproductive Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Placenta"})

  SampleType.create({"group"=>"Reproductive Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Cervicovaginal Swab"})

  SampleType.create({"group"=>"Reproductive Tract", "human_only"=>true, "insect_only"=>false, "name"=>"Uterus"})

  SampleType.create({"group"=>"Excrement", "human_only"=>false, "insect_only"=>false, "name"=>"Stool"})

  SampleType.create({"group"=>"Excrement", "human_only"=>false, "insect_only"=>false, "name"=>"Urine"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Heart"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Intestines"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Kidney"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Liver"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Muscle"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Stomach"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Bladder"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Thyroid"})

  SampleType.create({"group"=>"Organs", "human_only"=>false, "insect_only"=>false, "name"=>"Skin"})

  SampleType.create({"group"=>"Insect Body Parts", "human_only"=>false, "insect_only"=>true, "name"=>"Abdomen"})

  SampleType.create({"group"=>"Insect Body Parts", "human_only"=>false, "insect_only"=>true, "name"=>"Gaster"})

  SampleType.create({"group"=>"Insect Body Parts", "human_only"=>false, "insect_only"=>true, "name"=>"Guts"})

  SampleType.create({"group"=>"Insect Body Parts", "human_only"=>false, "insect_only"=>true, "name"=>"Head"})

  SampleType.create({"group"=>"Insect Body Parts", "human_only"=>false, "insect_only"=>true, "name"=>"Whole Body"})

  SampleType.create({"group"=>"Insect Body Parts", "human_only"=>false, "insect_only"=>true, "name"=>"Salivary Gland"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Mixed Tissue"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Simulation"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Cell Line"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Cultured Isolate"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Unknown"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Tumor"})

  SampleType.create({"group"=>"Other", "human_only"=>false, "insect_only"=>false, "name"=>"Environmental"})

  User.create({"allowed_features"=>nil, "archetypes"=>nil, "created_by_user_id"=>nil, "current_sign_in_at"=>nil, "current_sign_in_ip"=>nil, "email"=>"czid-e2e@chanzuckerberg.com", "institution"=>nil, "last_sign_in_at"=>nil, "last_sign_in_ip"=>nil, "name"=>"CZ ID Test Account", "phylo_trees_count"=>0, "profile_form_version"=>1, "role"=>1, "salt"=>"9qdDdrs65nkJocGvtoeMc74P", "samples_count"=>0, "segments"=>nil, "sign_in_count"=>0, "visualizations_count"=>0})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"3.4.18", "workflow"=>"consensus-genome"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"8.3.3", "workflow"=>"short-read-mngs"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"1.2.5", "workflow"=>"amr"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"0.7.3", "workflow"=>"long-read-mngs"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"2021-01-22", "workflow"=>"ncbi_index_date"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"1", "workflow"=>"human_host_genome"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"2", "workflow"=>"human_host_genome"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"3.5.1", "workflow"=>"consensus-genome"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"0.7.8", "workflow"=>"long-read-mngs"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"2024-02-06", "workflow"=>"ncbi_index_date"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"0.7.11", "workflow"=>"long-read-mngs"})

  WorkflowVersion.create({"deprecated"=>false, "runnable"=>true, "version"=>"8.3.11", "workflow"=>"short-read-mngs"})

  PathogenList.create({"creator_id"=>nil, "is_global"=>true})

  PathogenListVersion.create({"pathogen_list_id"=>1, "version"=>"1.0.0"})

  Pathogen.create({"tax_id"=>694003})

  Pathogen.create({"tax_id"=>573})

  Pathogen.create({"tax_id"=>562})

  Pathogen.create({"tax_id"=>28037})

  Pathogen.create({"tax_id"=>108098})

  Pathogen.create({"tax_id"=>329})

  # HABTM Associations

  safe_habtm_append(Citation.find(1).pathogen_list_versions, PathogenListVersion.where(id: [1] - Citation.find(1).pathogen_list_versions.pluck(:id)))

  safe_habtm_append(HostGenome.find(1).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 29] - HostGenome.find(1).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(2).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43] - HostGenome.find(2).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(3).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 21, 23, 24, 25, 26, 29, 30] - HostGenome.find(3).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(4).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(4).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(5).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(5).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(6).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(6).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(7).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(7).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(8).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(8).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(9).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(9).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(10).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(10).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(11).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(11).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(12).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(12).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(13).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(13).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(14).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(14).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(15).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(15).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(16).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(16).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(17).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(17).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(18).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(18).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(19).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(19).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(20).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(20).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(21).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(21).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(22).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(22).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(23).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(23).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(24).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(24).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(25).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(25).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(26).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(26).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(27).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(27).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(28).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(28).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(29).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(29).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(30).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(30).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(31).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(31).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(32).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(32).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(33).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(33).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(34).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(34).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(35).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(35).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(36).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(36).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(37).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(37).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(38).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(38).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(39).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(39).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(40).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(40).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(41).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(41).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(42).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(42).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(43).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(43).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(44).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(44).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(45).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(45).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(46).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(46).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(47).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(47).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(48).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(48).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(49).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(49).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(50).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(50).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(51).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(51).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(52).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(52).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(53).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(53).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(54).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(54).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(55).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(55).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(56).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(56).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(57).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(57).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(58).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(58).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(59).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(59).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(60).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(60).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(61).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(61).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(62).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(62).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(63).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(63).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(64).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(64).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(65).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(65).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(66).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(66).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(67).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(67).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(68).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(68).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(69).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(69).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(70).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(70).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(71).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(71).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(72).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(72).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(73).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(73).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(74).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(74).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(75).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(75).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(76).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(76).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(77).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(77).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(78).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(78).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(79).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(79).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(80).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(80).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(81).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(81).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(82).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(82).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(83).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(83).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(84).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(84).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(85).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(85).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(86).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(86).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(87).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(87).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(88).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(88).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(89).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(89).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(90).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(90).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(91).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(91).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(92).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(92).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(93).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(93).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(94).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(94).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(95).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(95).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(96).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(96).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(97).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(97).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(98).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(98).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(99).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(99).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(100).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(100).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(101).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(101).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(102).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(102).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(103).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(103).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(104).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(104).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(105).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(105).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(106).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(106).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(107).metadata_fields, MetadataField.where(id: [1, 2, 3, 4, 6, 7, 8, 9, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(107).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(108).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(108).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(109).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(109).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(110).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(110).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(111).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(111).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(112).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(112).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(113).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(113).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(114).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(114).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(115).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(115).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(116).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(116).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(117).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(117).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(118).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(118).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(119).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(119).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(120).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(120).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(121).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(121).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(122).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(122).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(123).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(123).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(124).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(124).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(125).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(125).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(126).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(126).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(127).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(127).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(128).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(128).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(129).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(129).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(130).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(130).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(131).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(131).metadata_fields.pluck(:id)))

  safe_habtm_append(HostGenome.find(132).metadata_fields, MetadataField.where(id: [1, 2, 3, 6, 7, 8, 11, 12, 13, 14, 15, 21, 23, 24, 25, 29] - HostGenome.find(132).metadata_fields.pluck(:id)))

  safe_habtm_append(Pathogen.find(1).pathogen_list_versions, PathogenListVersion.where(id: [1] - Pathogen.find(1).pathogen_list_versions.pluck(:id)))

  safe_habtm_append(Pathogen.find(2).pathogen_list_versions, PathogenListVersion.where(id: [1] - Pathogen.find(2).pathogen_list_versions.pluck(:id)))

  safe_habtm_append(Pathogen.find(3).pathogen_list_versions, PathogenListVersion.where(id: [1] - Pathogen.find(3).pathogen_list_versions.pluck(:id)))

  safe_habtm_append(Pathogen.find(4).pathogen_list_versions, PathogenListVersion.where(id: [1] - Pathogen.find(4).pathogen_list_versions.pluck(:id)))

  safe_habtm_append(Pathogen.find(5).pathogen_list_versions, PathogenListVersion.where(id: [1] - Pathogen.find(5).pathogen_list_versions.pluck(:id)))

  safe_habtm_append(Pathogen.find(6).pathogen_list_versions, PathogenListVersion.where(id: [1] - Pathogen.find(6).pathogen_list_versions.pluck(:id)))

end

SeedMigration::Migrator.bootstrap(20240802164435)
