DIR="$(cd -P -- "$(dirname -- "$0")" && pwd -P)"
cd ${DIR}
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/fastq/gold1_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/fastq/gold1_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/fastq/gold1_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/fastq/gold1_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/fastq/gold1-trimmed.log
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/prealignments/tmpwkctjzrw
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/prealignments/tmpzfpw_1dp
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/aligned_hg38/tmppflrp2u7
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/aligned_hg38/gold1_temp.bam.bai
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/aligned_hg38/chr_sizes.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/aligned_hg38/gold1_temp.bam
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/aligned_hg38/tmpt25x08ue
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/raw/hg38_annotations.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold1/PEPATAC_cleanup.sh
