DIR="$(cd -P -- "$(dirname -- "$0")" && pwd -P)"
cd ${DIR}
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/fastq/gold5_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/fastq/gold5_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/fastq/gold5_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/fastq/gold5_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/fastq/gold5-trimmed.log
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/prealignments/tmprtxyveqp
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/prealignments/tmph_1dx0dc
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/aligned_hg38/tmp1svm180z
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/aligned_hg38/gold5_temp.bam.bai
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/aligned_hg38/chr_sizes.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/aligned_hg38/gold5_temp.bam
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/aligned_hg38/tmp48rd6c1e
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/raw/hg38_annotations.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold5/PEPATAC_cleanup.sh
