DIR="$(cd -P -- "$(dirname -- "$0")" && pwd -P)"
cd ${DIR}
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/fastq/gold4_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/fastq/gold4_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/fastq/gold4_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/fastq/gold4_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/fastq/gold4-trimmed.log
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/prealignments/tmpm5mk9z8g
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/prealignments/tmpn_q2g22c
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/aligned_hg38/tmpmdi7by7l
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/aligned_hg38/gold4_temp.bam.bai
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/aligned_hg38/chr_sizes.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/aligned_hg38/gold4_temp.bam
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/aligned_hg38/tmphv0o4hf5
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/raw/hg38_annotations.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold4/PEPATAC_cleanup.sh
