DIR="$(cd -P -- "$(dirname -- "$0")" && pwd -P)"
cd ${DIR}
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/fastq/gold2_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/fastq/gold2_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/fastq/gold2_R2_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/fastq/gold2_R1_trim.fastq
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/fastq/gold2-trimmed.log
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/prealignments/tmp_tl9ayf9
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/prealignments/tmpczr1ywwq
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/aligned_hg38/tmpywkp7_bu
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/aligned_hg38/gold2_temp.bam.bai
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/aligned_hg38/chr_sizes.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/aligned_hg38/gold2_temp.bam
rmdir /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/aligned_hg38/tmptrcdrhev
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/raw/hg38_annotations.bed
rm /project/shefflab/processed/pepatac/gold_atac/results_pipeline/gold2/PEPATAC_cleanup.sh
