#!/bin/bash

diff ../../atac-seq-pipeline/src/encode_task_bam2ta.py encode_task_bam2ta.py 
diff ../../atac-seq-pipeline/src/encode_lib_blacklist_filter.py encode_lib_blacklist_filter.py 
diff ../../atac-seq-pipeline/src/encode_lib_genomic.py encode_lib_genomic.py 
diff ../../atac-seq-pipeline/src/encode_lib_log_parser.py encode_lib_log_parser.py 
diff ../../atac-seq-pipeline/src/encode_lib_common.py encode_lib_common.py 
diff ../../atac-seq-pipeline/src/encode_task_bowtie2.py encode_task_bowtie2.py 
diff ../../atac-seq-pipeline/src/encode_task_filter.py encode_task_filter.py 
diff ../../atac-seq-pipeline/src/encode_task_post_align.py encode_task_post_align.py 
diff ../../atac-seq-pipeline/src/encode_lib_frip.py encode_lib_frip.py 
diff ../../atac-seq-pipeline/src/encode_task_idr.py encode_task_idr.py 
diff ../../atac-seq-pipeline/src/encode_task_overlap.py encode_task_overlap.py 
diff ../../atac-seq-pipeline/src/encode_task_pool_ta.py encode_task_pool_ta.py 
diff ../../atac-seq-pipeline/src/encode_task_qc_report.py encode_task_qc_report.py 
diff ../../atac-seq-pipeline/src/encode_task_reproducibility.py encode_task_reproducibility.py 
diff ../../atac-seq-pipeline/src/encode_task_spr.py encode_task_spr.py 
diff ../../atac-seq-pipeline/src/encode_task_xcor.py encode_task_xcor.py
diff ../../atac-seq-pipeline/src/encode_task_jsd.py encode_task_jsd.py
diff ../../atac-seq-pipeline/src/encode_task_gc_bias.py encode_task_gc_bias.py

