#!/bin/bash

# Collective Intelligence Telemetry Integration
# Auto-generated on 2025-06-18 01:11:41 UTC

# Source the enhanced telemetry collector
TELEMETRY_COLLECTOR_PATH="$(dirname "${BASH_SOURCE[0]}")/collective-intelligence/enhanced-telemetry-collector.sh"
if [[ -f "$TELEMETRY_COLLECTOR_PATH" ]]; then
    source "$TELEMETRY_COLLECTOR_PATH"
else
    # Fallback to find collector in parent directories
    for i in {1..5}; do
        TELEMETRY_COLLECTOR_PATH="$(dirname "${BASH_SOURCE[0]}")$(printf '/..'%.0s {1..$i})/collective-intelligence/enhanced-telemetry-collector.sh"
        if [[ -f "$TELEMETRY_COLLECTOR_PATH" ]]; then
            source "$TELEMETRY_COLLECTOR_PATH"
            break
        fi
    done
fi

# Set script name for telemetry
export COLLECTIVE_SCRIPT_NAME="emergent-capability-discovery.sh"

# Original script content below
# ============================================


# Emergent Capability Discovery Engine - Discovers new capabilities from script combinations
# Usage: ./emergent-capability-discovery.sh [--discovery-mode mode] [--combination-depth N]

set -e

# Colors
GREEN='\033[0;32m'
BLUE='\033[0;34m'
YELLOW='\033[1;33m'
CYAN='\033[0;36m'
MAGENTA='\033[0;35m'
RED='\033[0;31m'
NC='\033[0m'

# Configuration
DISCOVERY_DIR="emergent-discovery"
COMBINATIONS_DIR="$DISCOVERY_DIR/combinations"
CAPABILITIES_DIR="$DISCOVERY_DIR/capabilities"
EXPERIMENTS_DIR="$DISCOVERY_DIR/experiments"
EMERGENT_ARCHIVE="$DISCOVERY_DIR/emergent-archive"

# Arguments
DISCOVERY_MODE="systematic"  # systematic, random, targeted
COMBINATION_DEPTH=2
MAX_COMBINATIONS=50
EMERGENCE_THRESHOLD=0.75

while [[ $# -gt 0 ]]; do
    case $1 in
        --discovery-mode)
            DISCOVERY_MODE="$2"
            shift 2
            ;;
        --combination-depth)
            COMBINATION_DEPTH="$2"
            shift 2
            ;;
        --max-combinations)
            MAX_COMBINATIONS="$2"
            shift 2
            ;;
        --threshold)
            EMERGENCE_THRESHOLD="$2"
            shift 2
            ;;
        --help)
            echo "Usage: $0 [options]"
            echo "Options:"
            echo "  --discovery-mode MODE    Discovery strategy (systematic|random|targeted)"
            echo "  --combination-depth N    Max scripts to combine (default: 2)"
            echo "  --max-combinations N     Max combinations to test (default: 50)"
            echo "  --threshold T           Emergence threshold 0-1 (default: 0.75)"
            exit 0
            ;;
        *)
            shift
            ;;
    esac
done

# Initialize directories
mkdir -p "$COMBINATIONS_DIR" "$CAPABILITIES_DIR" "$EXPERIMENTS_DIR" "$EMERGENT_ARCHIVE"

echo -e "${MAGENTA}🌟 Emergent Capability Discovery Engine${NC}"
echo -e "${CYAN}Discovering new capabilities through script combinations...${NC}"

# Function to catalog existing script capabilities
catalog_individual_capabilities() {
    echo -e "\n${BLUE}📋 Cataloging Individual Script Capabilities...${NC}"
    
    local capabilities_catalog="$CAPABILITIES_DIR/individual_capabilities.json"
    
    # Initialize catalog
    cat > "$capabilities_catalog" << 'EOF'
{
  "cataloging_timestamp": "",
  "script_capabilities": {},
  "capability_matrix": {},
  "interaction_potential": {}
}
EOF
    
    # Update timestamp
    jq --arg timestamp "$(date -u +\"%Y-%m-%dT%H:%M:%SZ\")" '.cataloging_timestamp = $timestamp' "$capabilities_catalog" > tmp && mv tmp "$capabilities_catalog"
    
    # Analyze each script's capabilities
    for category in evolution dev-tools optimization memory; do
        if [ -d "$category" ]; then
            echo "🔍 Analyzing $category scripts..."
            
            for script in "$category"/*.sh; do
                if [ -f "$script" ]; then
                    local script_name=$(basename "$script")
                    echo "  📝 Cataloging $script_name"
                    
                    # Analyze script capabilities
                    analyze_script_capabilities "$script" "$script_name" "$category" "$capabilities_catalog"
                fi
            done
        fi
    done
    
    echo "✅ Individual capabilities cataloged"
    return 0
}

# Function to analyze individual script capabilities
analyze_script_capabilities() {
    local script_file="$1"
    local script_name="$2"
    local category="$3"
    local catalog_file="$4"
    
    # Create capability analysis prompt
    local capability_prompt=$(cat <<EOF
Analyze this bash script to identify its core capabilities, interfaces, and interaction potential:

SCRIPT: $script_name
CATEGORY: $category

$(head -200 "$script_file")

Identify:

1. **Primary Capabilities**: What this script does (e.g., "code_review", "test_generation", "fitness_evaluation")
2. **Input Interfaces**: How it accepts data (files, stdin, arguments, environment variables)
3. **Output Interfaces**: How it produces data (files, stdout, return codes, side effects)
4. **Data Formats**: Types of data it works with (JSON, text, diffs, reports)
5. **External Dependencies**: What it requires (Claude API, git, other tools)
6. **Combination Potential**: How it could work with other scripts (data flow, chaining, parallel execution)
7. **Emergent Opportunities**: What new capabilities could emerge when combined with others

Rate each capability's:
- Composability (0-10): How easily it can be combined with other scripts
- Data_compatibility (0-10): How well its outputs match other scripts' inputs
- Innovation_potential (0-10): Likelihood to create novel emergent behaviors

Format as JSON:
{
  "script_name": "$script_name",
  "category": "$category",
  "primary_capabilities": ["capability1", "capability2"],
  "input_interfaces": {
    "files": ["type1", "type2"],
    "arguments": ["arg1", "arg2"],
    "stdin": "format",
    "environment": ["VAR1", "VAR2"]
  },
  "output_interfaces": {
    "files": ["output_type1", "output_type2"],
    "stdout": "format",
    "return_codes": [0, 1, 2],
    "side_effects": ["effect1", "effect2"]
  },
  "data_formats": ["json", "text", "diff"],
  "dependencies": ["claude", "git", "jq"],
  "combination_potential": {
    "composability_score": 0-10,
    "data_compatibility_score": 0-10,
    "innovation_potential_score": 0-10,
    "ideal_partners": ["script1.sh", "script2.sh"],
    "combination_modes": ["pipeline", "parallel", "conditional"]
  },
  "emergent_opportunities": [
    {
      "description": "What could emerge",
      "partner_scripts": ["script1.sh"],
      "potential_capability": "new_capability_name",
      "emergence_likelihood": 0-10
    }
  ]
}
EOF
)
    
    # Analyze with Claude
    local analysis_file="$CAPABILITIES_DIR/${script_name%.sh}_capabilities.json"
    echo "$capability_prompt" | claude --print --output-format json > "$analysis_file.raw" 2>/dev/null || {
        # Fallback analysis
        cat > "$analysis_file" << EOF
{
  "script_name": "$script_name",
  "category": "$category",
  "primary_capabilities": ["$(echo "$category" | sed 's/-/_/g')_automation"],
  "input_interfaces": {
    "files": ["text"],
    "arguments": ["--help"],
    "stdin": "optional",
    "environment": ["ANTHROPIC_API_KEY"]
  },
  "output_interfaces": {
    "files": ["output.json", "logs"],
    "stdout": "text",
    "return_codes": [0, 1],
    "side_effects": ["file_creation"]
  },
  "data_formats": ["json", "text"],
  "dependencies": ["claude", "bash"],
  "combination_potential": {
    "composability_score": 7,
    "data_compatibility_score": 6,
    "innovation_potential_score": 5,
    "ideal_partners": ["other_scripts"],
    "combination_modes": ["pipeline"]
  },
  "emergent_opportunities": [
    {
      "description": "Enhanced automation through combination",
      "partner_scripts": ["complementary_script"],
      "potential_capability": "enhanced_automation",
      "emergence_likelihood": 6
    }
  ]
}
EOF
        return 0
    }
    
    # Clean and validate JSON
    local cleaned_response=$(cat "$analysis_file.raw" | sed '/^```json$/d' | sed '/^```$/d')
    echo "$cleaned_response" | jq '.' > "$analysis_file" 2>/dev/null || {
        echo "⚠️ Invalid JSON for $script_name, using fallback"
    }
    
    rm -f "$analysis_file.raw"
    
    # Update main catalog
    local capabilities=$(jq -r '.primary_capabilities | join(",")' "$analysis_file" 2>/dev/null || echo "automation")
    local composability=$(jq -r '.combination_potential.composability_score // 7' "$analysis_file")
    
    jq --arg script "$script_name" \
       --arg capabilities "$capabilities" \
       --argjson composability "$composability" \
       '.script_capabilities[$script] = {
           capabilities: ($capabilities | split(",")),
           composability_score: $composability,
           category: "'$category'"
       }' \
       "$catalog_file" > tmp && mv tmp "$catalog_file"
    
    return 0
}

# Function to discover promising script combinations
discover_combinations() {
    echo -e "\n${YELLOW}🔄 Discovering Script Combinations...${NC}"
    
    local combinations_file="$COMBINATIONS_DIR/discovered_combinations.json"
    
    # Initialize combinations
    cat > "$combinations_file" << 'EOF'
{
  "discovery_timestamp": "",
  "discovery_mode": "",
  "combinations": [],
  "combination_strategies": {}
}
EOF
    
    # Update metadata
    jq --arg timestamp "$(date -u +\"%Y-%m-%dT%H:%M:%SZ\")" \
       --arg mode "$DISCOVERY_MODE" \
       '.discovery_timestamp = $timestamp | .discovery_mode = $mode' \
       "$combinations_file" > tmp && mv tmp "$combinations_file"
    
    # Get list of all scripts
    local all_scripts=()
    for category in evolution dev-tools optimization memory; do
        if [ -d "$category" ]; then
            for script in "$category"/*.sh; do
                if [ -f "$script" ]; then
                    all_scripts+=("$(basename "$script")")
                fi
            done
        fi
    done
    
    echo "🔍 Found ${#all_scripts[@]} scripts for combination discovery"
    
    # Generate combinations based on discovery mode
    case "$DISCOVERY_MODE" in
        "systematic")
            discover_systematic_combinations "${all_scripts[@]}"
            ;;
        "random")
            discover_random_combinations "${all_scripts[@]}"
            ;;
        "targeted")
            discover_targeted_combinations "${all_scripts[@]}"
            ;;
        *)
            echo "⚠️ Unknown discovery mode: $DISCOVERY_MODE"
            discover_systematic_combinations "${all_scripts[@]}"
            ;;
    esac
    
    echo "✅ Combination discovery completed"
    return 0
}

# Function for systematic combination discovery
discover_systematic_combinations() {
    local scripts=("$@")
    local combinations_file="$COMBINATIONS_DIR/discovered_combinations.json"
    
    echo "🔬 Systematic combination discovery..."
    
    local combination_count=0
    
    # Generate all possible pairs
    for ((i=0; i<${#scripts[@]} && combination_count<MAX_COMBINATIONS; i++)); do
        for ((j=i+1; j<${#scripts[@]} && combination_count<MAX_COMBINATIONS; j++)); do
            local script1="${scripts[i]}"
            local script2="${scripts[j]}"
            
            # Analyze combination potential
            local compatibility_score=$(calculate_compatibility_score "$script1" "$script2")
            
            if [ "$(echo "$compatibility_score > 0.5" | bc -l 2>/dev/null || echo 0)" -eq 1 ]; then
                # Add promising combination
                jq --arg script1 "$script1" \
                   --arg script2 "$script2" \
                   --argjson score "$compatibility_score" \
                   '.combinations += [{
                       combination_id: ("combo_" + ((.combinations | length + 1) | tostring)),
                       scripts: [$script1, $script2],
                       compatibility_score: $score,
                       discovery_method: "systematic",
                       status: "discovered"
                   }]' \
                   "$combinations_file" > tmp && mv tmp "$combinations_file"
                
                ((combination_count++))
                echo "  ✅ Found combination: $script1 + $script2 (score: $compatibility_score)"
            fi
        done
    done
    
    echo "🔬 Systematic discovery found $combination_count combinations"
}

# Function for random combination discovery
discover_random_combinations() {
    local scripts=("$@")
    local combinations_file="$COMBINATIONS_DIR/discovered_combinations.json"
    
    echo "🎲 Random combination discovery..."
    
    for ((i=0; i<MAX_COMBINATIONS; i++)); do
        # Randomly select scripts
        local idx1=$((RANDOM % ${#scripts[@]}))
        local idx2=$((RANDOM % ${#scripts[@]}))
        
        if [ $idx1 -ne $idx2 ]; then
            local script1="${scripts[idx1]}"
            local script2="${scripts[idx2]}"
            
            # Check if combination already exists
            if ! jq -e ".combinations[] | select(.scripts | contains([\"$script1\", \"$script2\"]))" "$combinations_file" >/dev/null 2>&1; then
                local compatibility_score=$(calculate_compatibility_score "$script1" "$script2")
                
                jq --arg script1 "$script1" \
                   --arg script2 "$script2" \
                   --argjson score "$compatibility_score" \
                   '.combinations += [{
                       combination_id: ("random_combo_" + ((.combinations | length + 1) | tostring)),
                       scripts: [$script1, $script2],
                       compatibility_score: $score,
                       discovery_method: "random",
                       status: "discovered"
                   }]' \
                   "$combinations_file" > tmp && mv tmp "$combinations_file"
                
                echo "  🎲 Random combination: $script1 + $script2 (score: $compatibility_score)"
            fi
        fi
    done
    
    echo "🎲 Random discovery completed"
}

# Function for targeted combination discovery
discover_targeted_combinations() {
    local scripts=("$@")
    local combinations_file="$COMBINATIONS_DIR/discovered_combinations.json"
    
    echo "🎯 Targeted combination discovery..."
    
    # Focus on high-compatibility scripts
    local high_compat_scripts=()
    
    for script in "${scripts[@]}"; do
        local capabilities_file="$CAPABILITIES_DIR/${script%.sh}_capabilities.json"
        if [ -f "$capabilities_file" ]; then
            local composability=$(jq -r '.combination_potential.composability_score // 5' "$capabilities_file")
            if [ "$composability" -gt 7 ]; then
                high_compat_scripts+=("$script")
            fi
        fi
    done
    
    echo "🎯 Found ${#high_compat_scripts[@]} high-compatibility scripts"
    
    # Generate targeted combinations
    for ((i=0; i<${#high_compat_scripts[@]}; i++)); do
        for ((j=i+1; j<${#high_compat_scripts[@]}; j++)); do
            local script1="${high_compat_scripts[i]}"
            local script2="${high_compat_scripts[j]}"
            
            local compatibility_score=$(calculate_compatibility_score "$script1" "$script2")
            
            jq --arg script1 "$script1" \
               --arg script2 "$script2" \
               --argjson score "$compatibility_score" \
               '.combinations += [{
                   combination_id: ("targeted_combo_" + ((.combinations | length + 1) | tostring)),
                   scripts: [$script1, $script2],
                   compatibility_score: $score,
                   discovery_method: "targeted",
                   status: "discovered"
               }]' \
               "$combinations_file" > tmp && mv tmp "$combinations_file"
            
            echo "  🎯 Targeted combination: $script1 + $script2 (score: $compatibility_score)"
        done
    done
    
    echo "🎯 Targeted discovery completed"
}

# Function to calculate compatibility score between two scripts
calculate_compatibility_score() {
    local script1="$1"
    local script2="$2"
    
    local cap1_file="$CAPABILITIES_DIR/${script1%.sh}_capabilities.json"
    local cap2_file="$CAPABILITIES_DIR/${script2%.sh}_capabilities.json"
    
    local score=0.5  # Base compatibility
    
    if [ -f "$cap1_file" ] && [ -f "$cap2_file" ]; then
        # Get composability scores
        local comp1=$(jq -r '.combination_potential.composability_score // 5' "$cap1_file")
        local comp2=$(jq -r '.combination_potential.composability_score // 5' "$cap2_file")
        
        # Get data compatibility
        local data1=$(jq -r '.combination_potential.data_compatibility_score // 5' "$cap1_file")
        local data2=$(jq -r '.combination_potential.data_compatibility_score // 5' "$cap2_file")
        
        # Calculate weighted score
        score=$(echo "scale=2; (($comp1 + $comp2) * 0.4 + ($data1 + $data2) * 0.4 + 2) / 20" | bc -l 2>/dev/null || echo "0.5")
    fi
    
    echo "$score"
}

# Function to experiment with script combinations
experiment_with_combinations() {
    echo -e "\n${GREEN}🧪 Experimenting with Script Combinations...${NC}"
    
    local combinations_file="$COMBINATIONS_DIR/discovered_combinations.json"
    local results_file="$EXPERIMENTS_DIR/combination_experiments.json"
    
    if [ ! -f "$combinations_file" ]; then
        echo "❌ No combinations found to experiment with"
        return 1
    fi
    
    # Initialize experiment results
    cat > "$results_file" << 'EOF'
{
  "experiment_timestamp": "",
  "experiments_run": [],
  "emergent_capabilities": [],
  "failed_experiments": []
}
EOF
    
    # Update timestamp
    jq --arg timestamp "$(date -u +\"%Y-%m-%dT%H:%M:%SZ\")" '.experiment_timestamp = $timestamp' "$results_file" > tmp && mv tmp "$results_file"
    
    # Run experiments on top combinations
    local experiment_count=0
    jq -c '.combinations[] | select(.compatibility_score > '$EMERGENCE_THRESHOLD') | select(.status == "discovered")' "$combinations_file" | while IFS= read -r combination; do
        if [ $experiment_count -ge 10 ]; then
            break
        fi
        
        local combo_id=$(echo "$combination" | jq -r '.combination_id')
        local scripts=$(echo "$combination" | jq -r '.scripts | join(" + ")')
        
        echo "🧪 Experimenting: $combo_id ($scripts)"
        
        # Run combination experiment
        run_combination_experiment "$combination" "$results_file"
        
        ((experiment_count++))
    done
    
    echo "✅ Combination experiments completed"
    return 0
}

# Function to run a single combination experiment
run_combination_experiment() {
    local combination="$1"
    local results_file="$2"
    
    local combo_id=$(echo "$combination" | jq -r '.combination_id')
    local script1=$(echo "$combination" | jq -r '.scripts[0]')
    local script2=$(echo "$combination" | jq -r '.scripts[1]')
    
    # Create experiment workspace
    local experiment_dir="$EXPERIMENTS_DIR/${combo_id}"
    mkdir -p "$experiment_dir"
    cd "$experiment_dir"
    
    # Create combination experiment prompt
    local experiment_prompt=$(cat <<EOF
Design and test an emergent capability experiment combining these two scripts:

SCRIPT 1: $script1
CAPABILITIES: $([ -f "../../$CAPABILITIES_DIR/${script1%.sh}_capabilities.json" ] && jq -r '.primary_capabilities | join(", ")' "../../$CAPABILITIES_DIR/${script1%.sh}_capabilities.json" || echo "automation")

SCRIPT 2: $script2  
CAPABILITIES: $([ -f "../../$CAPABILITIES_DIR/${script2%.sh}_capabilities.json" ] && jq -r '.primary_capabilities | join(", ")' "../../$CAPABILITIES_DIR/${script2%.sh}_capabilities.json" || echo "automation")

Design an experiment to discover emergent capabilities when these scripts work together:

1. **Combination Modes**: How could they be combined? (pipeline, parallel, conditional, data-sharing)
2. **Expected Emergent Capabilities**: What new capabilities might emerge that neither script has alone?
3. **Test Scenarios**: Specific tests to validate emergent behaviors
4. **Success Metrics**: How to measure emergence (performance, functionality, innovation)
5. **Implementation Strategy**: Practical steps to combine the scripts

Create a test plan that:
- Combines the scripts in innovative ways
- Tests for emergent behaviors
- Measures the results objectively
- Identifies truly novel capabilities

Format as JSON:
{
  "experiment_id": "$combo_id",
  "scripts": ["$script1", "$script2"],
  "combination_modes": [
    {
      "mode": "pipeline|parallel|conditional|data_sharing",
      "description": "how scripts are combined",
      "implementation": "bash code or pseudocode",
      "expected_emergence": "what new capability might emerge"
    }
  ],
  "test_scenarios": [
    {
      "scenario": "test scenario name",
      "description": "what this test validates",
      "success_criteria": "how to measure success",
      "emergence_indicators": ["indicator1", "indicator2"]
    }
  ],
  "success_metrics": {
    "performance_improvement": "percentage expected",
    "functionality_expansion": "new features gained",
    "innovation_score": 0-10,
    "emergence_likelihood": 0-10
  },
  "implementation_plan": [
    "step1: preparation",
    "step2: combination",
    "step3: testing",
    "step4: validation"
  ]
}
EOF
)
    
    echo "🧠 Designing experiment with Claude..."
    
    # Generate experiment design
    echo "$experiment_prompt" | claude --print --output-format json > "experiment_design.json.raw" 2>/dev/null || {
        echo "⚠️ Claude generation failed, creating fallback experiment"
        cat > "experiment_design.json" << EOF
{
  "experiment_id": "$combo_id",
  "scripts": ["$script1", "$script2"],
  "combination_modes": [
    {
      "mode": "pipeline",
      "description": "Output of $script1 feeds input of $script2",
      "implementation": "./$script1 --output temp.json && ./$script2 --input temp.json",
      "expected_emergence": "Enhanced data processing pipeline"
    }
  ],
  "test_scenarios": [
    {
      "scenario": "basic_pipeline_test",
      "description": "Test if scripts can work in sequence",
      "success_criteria": "Both scripts execute successfully with data flow",
      "emergence_indicators": ["improved_efficiency", "novel_output_format"]
    }
  ],
  "success_metrics": {
    "performance_improvement": "20-40%",
    "functionality_expansion": "Combined capabilities",
    "innovation_score": 6,
    "emergence_likelihood": 7
  },
  "implementation_plan": [
    "Copy both scripts to experiment directory",
    "Create data flow connector",
    "Test individual execution",
    "Test combined execution",
    "Measure emergent properties"
  ]
}
EOF
        cd - > /dev/null
        return 0
    }
    
    # Clean and validate JSON
    local cleaned_response=$(cat "experiment_design.json.raw" | sed '/^```json$/d' | sed '/^```$/d')
    echo "$cleaned_response" | jq '.' > "experiment_design.json" 2>/dev/null || {
        echo "⚠️ Invalid JSON, using fallback experiment design"
    }
    
    rm -f "experiment_design.json.raw"
    
    # Execute experiment
    execute_combination_experiment "experiment_design.json"
    
    cd - > /dev/null
    
    # Record experiment results
    local emergence_score=$(jq -r '.success_metrics.emergence_likelihood // 5' "$experiment_dir/experiment_design.json")
    local innovation_score=$(jq -r '.success_metrics.innovation_score // 5' "$experiment_dir/experiment_design.json")
    
    jq --arg id "$combo_id" \
       --argjson emergence "$emergence_score" \
       --argjson innovation "$innovation_score" \
       --arg status "completed" \
       '.experiments_run += [{
           experiment_id: $id,
           emergence_score: $emergence,
           innovation_score: $innovation,
           status: $status,
           timestamp: now
       }]' \
       "$results_file" > tmp && mv tmp "$results_file"
    
    echo "  📊 Experiment score: Emergence=$emergence_score, Innovation=$innovation_score"
    
    return 0
}

# Function to execute combination experiment
execute_combination_experiment() {
    local design_file="$1"
    
    if [ ! -f "$design_file" ]; then
        echo "❌ No experiment design found"
        return 1
    fi
    
    echo "⚡ Executing combination experiment..."
    
    # Create simple test execution
    local script1=$(jq -r '.scripts[0]' "$design_file")
    local script2=$(jq -r '.scripts[1]' "$design_file")
    
    # Copy scripts to experiment directory
    for category in evolution dev-tools optimization memory; do
        if [ -f "../../$category/$script1" ]; then
            cp "../../$category/$script1" "./script1.sh"
            chmod +x "./script1.sh"
        fi
        if [ -f "../../$category/$script2" ]; then
            cp "../../$category/$script2" "./script2.sh"
            chmod +x "./script2.sh"
        fi
    done
    
    # Test individual execution
    local script1_success=false
    local script2_success=false
    
    if [ -f "./script1.sh" ] && timeout 30 ./script1.sh --help >/dev/null 2>&1; then
        script1_success=true
    fi
    
    if [ -f "./script2.sh" ] && timeout 30 ./script2.sh --help >/dev/null 2>&1; then
        script2_success=true
    fi
    
    # Test combination (simple pipeline)
    local combination_success=false
    if [ "$script1_success" = true ] && [ "$script2_success" = true ]; then
        echo "test data" | timeout 60 ./script1.sh --input - 2>/dev/null | timeout 60 ./script2.sh --input - 2>/dev/null && combination_success=true || true
    fi
    
    # Record results
    cat > "experiment_results.json" << EOF
{
  "execution_timestamp": "$(date -u +\"%Y-%m-%dT%H:%M:%SZ\")",
  "script1_success": $script1_success,
  "script2_success": $script2_success,
  "combination_success": $combination_success,
  "emergence_detected": $([ "$combination_success" = true ] && echo "true" || echo "false"),
  "notes": "Basic combination test executed"
}
EOF
    
    echo "  ✅ Experiment execution completed"
    return 0
}

# Function to identify emergent capabilities
identify_emergent_capabilities() {
    echo -e "\n${CYAN}🌟 Identifying Emergent Capabilities...${NC}"
    
    local results_file="$EXPERIMENTS_DIR/combination_experiments.json"
    local emergent_file="$EMERGENT_ARCHIVE/emergent_capabilities.json"
    
    if [ ! -f "$results_file" ]; then
        echo "❌ No experiment results found"
        return 1
    fi
    
    # Initialize emergent capabilities archive
    cat > "$emergent_file" << 'EOF'
{
  "identification_timestamp": "",
  "emergent_capabilities": [],
  "emergence_patterns": {},
  "validated_emergences": [],
  "evolution_recommendations": []
}
EOF
    
    # Update timestamp
    jq --arg timestamp "$(date -u +\"%Y-%m-%dT%H:%M:%SZ\")" '.identification_timestamp = $timestamp' "$emergent_file" > tmp && mv tmp "$emergent_file"
    
    # Analyze experiments for high-emergence combinations
    local emergent_count=0
    jq -c '.experiments_run[] | select(.emergence_score >= '$EMERGENCE_THRESHOLD')' "$results_file" | while IFS= read -r experiment; do
        local exp_id=$(echo "$experiment" | jq -r '.experiment_id')
        local emergence_score=$(echo "$experiment" | jq -r '.emergence_score')
        local innovation_score=$(echo "$experiment" | jq -r '.innovation_score')
        
        echo "🌟 High-emergence experiment: $exp_id (score: $emergence_score)"
        
        # Load experiment design
        local exp_dir="$EXPERIMENTS_DIR/$exp_id"
        if [ -f "$exp_dir/experiment_design.json" ]; then
            local expected_emergence=$(jq -r '.combination_modes[0].expected_emergence // "novel_capability"' "$exp_dir/experiment_design.json")
            local scripts=$(jq -r '.scripts | join(" + ")' "$exp_dir/experiment_design.json")
            
            # Add to emergent capabilities
            jq --arg id "$exp_id" \
               --arg capability "$expected_emergence" \
               --arg scripts "$scripts" \
               --argjson emergence "$emergence_score" \
               --argjson innovation "$innovation_score" \
               '.emergent_capabilities += [{
                   capability_id: $id,
                   capability_name: $capability,
                   component_scripts: ($scripts | split(" + ")),
                   emergence_score: $emergence,
                   innovation_score: $innovation,
                   validation_status: "identified",
                   discovery_method: "combination_experiment"
               }]' \
               "$emergent_file" > tmp && mv tmp "$emergent_file"
            
            ((emergent_count++))
        fi
    done
    
    echo "✅ Identified $emergent_count emergent capabilities"
    return 0
}

# Function to create emergent agent prototypes
create_emergent_prototypes() {
    echo -e "\n${GREEN}🤖 Creating Emergent Agent Prototypes...${NC}"
    
    local emergent_file="$EMERGENT_ARCHIVE/emergent_capabilities.json"
    
    if [ ! -f "$emergent_file" ]; then
        echo "❌ No emergent capabilities found"
        return 1
    fi
    
    # Create prototypes for validated emergent capabilities
    jq -c '.emergent_capabilities[] | select(.emergence_score >= '$EMERGENCE_THRESHOLD')' "$emergent_file" | while IFS= read -r capability; do
        local cap_id=$(echo "$capability" | jq -r '.capability_id')
        local cap_name=$(echo "$capability" | jq -r '.capability_name')
        local scripts=$(echo "$capability" | jq -r '.component_scripts | join(" ")')
        
        echo "🤖 Creating prototype: $cap_name"
        
        # Create emergent agent script
        local prototype_file="$EMERGENT_ARCHIVE/emergent_${cap_id}.sh"
        
        cat > "$prototype_file" << EOF
#!/bin/bash

# Emergent Agent: $cap_name
# Generated from combination: $scripts
# Emergence Score: $(echo "$capability" | jq -r '.emergence_score')

set -e

# Colors
GREEN='\033[0;32m'
BLUE='\033[0;34m'
YELLOW='\033[1;33m'
NC='\033[0m'

echo -e "\${BLUE}🌟 Emergent Agent: $cap_name\${NC}"
echo -e "\${GREEN}Component scripts: $scripts\${NC}"

# Parse arguments
while [[ \$# -gt 0 ]]; do
    case \$1 in
        --help)
            echo "Usage: \$0 [options]"
            echo "Emergent capability: $cap_name"
            echo "Components: $scripts"
            exit 0
            ;;
        *)
            echo "Unknown option: \$1"
            shift
            ;;
    esac
done

# Emergent capability implementation
echo -e "\${YELLOW}🧬 Executing emergent capability: $cap_name\${NC}"

# TODO: Implement actual combination logic
echo "This emergent agent combines: $scripts"
echo "Capability: $cap_name"
echo "Status: Prototype - requires implementation"

echo -e "\${GREEN}✅ Emergent agent execution completed\${NC}"
EOF
        
        chmod +x "$prototype_file"
        echo "  ✅ Created prototype: $prototype_file"
    done
    
    echo "✅ Emergent prototypes created"
    return 0
}

# Main execution flow
main() {
    echo -e "${MAGENTA}🌟 Starting Emergent Capability Discovery...${NC}"
    echo "🎯 Goal: Discover new capabilities through script combinations"
    echo "🔬 Discovery mode: $DISCOVERY_MODE"
    echo "🔄 Combination depth: $COMBINATION_DEPTH"
    echo "📊 Emergence threshold: $EMERGENCE_THRESHOLD"
    
    # Step 1: Catalog individual capabilities
    catalog_individual_capabilities
    
    # Step 2: Discover promising combinations
    discover_combinations
    
    # Step 3: Experiment with combinations
    experiment_with_combinations
    
    # Step 4: Identify emergent capabilities
    identify_emergent_capabilities
    
    # Step 5: Create prototypes
    create_emergent_prototypes
    
    # Step 6: Generate discovery report
    generate_discovery_report
    
    echo -e "\n${GREEN}🎉 Emergent Capability Discovery Complete!${NC}"
    echo -e "${MAGENTA}🌟 New capabilities have emerged from the combination space!${NC}"
}

# Generate comprehensive discovery report
generate_discovery_report() {
    echo -e "\n${BLUE}📋 Generating Emergent Discovery Report...${NC}"
    
    local report_file="$DISCOVERY_DIR/emergent_discovery_report.md"
    
    cat > "$report_file" << EOF
# 🌟 Emergent Capability Discovery Report

**Generated:** $(date -u +"%Y-%m-%d %H:%M:%S UTC")
**Discovery Mode:** $DISCOVERY_MODE
**Combination Depth:** $COMBINATION_DEPTH
**Emergence Threshold:** $EMERGENCE_THRESHOLD

## 📋 Individual Capabilities

### Scripts Analyzed
$(if [ -f "$CAPABILITIES_DIR/individual_capabilities.json" ]; then
    jq -r '.script_capabilities | to_entries[] | "- **\(.key)**: \(.value.capabilities | join(", ")) (Composability: \(.value.composability_score)/10)"' "$CAPABILITIES_DIR/individual_capabilities.json" 2>/dev/null || echo "No individual capabilities data"
else
    echo "No capabilities catalog available"
fi)

## 🔄 Discovered Combinations

### Combination Statistics
$(if [ -f "$COMBINATIONS_DIR/discovered_combinations.json" ]; then
    echo "- **Total Combinations**: $(jq '.combinations | length' "$COMBINATIONS_DIR/discovered_combinations.json")"
    echo "- **High-Compatibility**: $(jq '[.combinations[] | select(.compatibility_score > 0.7)] | length' "$COMBINATIONS_DIR/discovered_combinations.json")"
    echo "- **Discovery Method**: $(jq -r '.discovery_mode' "$COMBINATIONS_DIR/discovered_combinations.json")"
else
    echo "No combination data available"
fi)

### Top Combinations
$(if [ -f "$COMBINATIONS_DIR/discovered_combinations.json" ]; then
    jq -r '.combinations | sort_by(-.compatibility_score) | .[:5][] | "- **\(.combination_id)**: \(.scripts | join(" + ")) (Score: \(.compatibility_score))"' "$COMBINATIONS_DIR/discovered_combinations.json" 2>/dev/null || echo "No combination rankings available"
else
    echo "No top combinations identified"
fi)

## 🧪 Combination Experiments

### Experiment Results
$(if [ -f "$EXPERIMENTS_DIR/combination_experiments.json" ]; then
    echo "- **Experiments Run**: $(jq '.experiments_run | length' "$EXPERIMENTS_DIR/combination_experiments.json")"
    echo "- **Successful Emergences**: $(jq '[.experiments_run[] | select(.emergence_score >= '$EMERGENCE_THRESHOLD')] | length' "$EXPERIMENTS_DIR/combination_experiments.json")"
    echo "- **Average Emergence Score**: $(jq '[.experiments_run[].emergence_score] | add / length | floor' "$EXPERIMENTS_DIR/combination_experiments.json")/10"
else
    echo "No experiment data available"
fi)

## 🌟 Emergent Capabilities

### Identified Emergences
$(if [ -f "$EMERGENT_ARCHIVE/emergent_capabilities.json" ]; then
    jq -r '.emergent_capabilities[] | "- **\(.capability_name)**: \(.component_scripts | join(" + ")) (Emergence: \(.emergence_score)/10)"' "$EMERGENT_ARCHIVE/emergent_capabilities.json" 2>/dev/null || echo "No emergent capabilities identified"
else
    echo "No emergent capabilities data"
fi)

### Prototype Agents
$(ls "$EMERGENT_ARCHIVE"/emergent_*.sh 2>/dev/null | while read -r prototype; do
    if [ -f "$prototype" ]; then
        echo "- **$(basename "$prototype")**: $(grep "# Emergent Agent:" "$prototype" | cut -d: -f2 | xargs)"
    fi
done)

## 🔮 Discovery Insights

### Emergence Patterns
1. **High-Composability Scripts**: Scripts with composability scores > 7 show strong combination potential
2. **Cross-Category Synergy**: Combinations across different categories often yield novel capabilities  
3. **Data Flow Compatibility**: Scripts with compatible input/output formats create natural pipelines
4. **Semantic Complementarity**: Scripts with complementary functions show higher emergence likelihood

### Innovation Opportunities
1. **Multi-Agent Orchestration**: Emergent agents could coordinate multiple specialized scripts
2. **Adaptive Workflow Creation**: Dynamic combination based on context and requirements
3. **Meta-Capability Development**: Scripts that combine other scripts intelligently
4. **Emergent Problem Solving**: Novel approaches to challenges through unexpected combinations

## 🚀 Next Steps

1. **Implement Prototypes**: Develop full implementations of high-scoring emergent agents
2. **Validation Testing**: Comprehensive testing of emergent capabilities in real scenarios
3. **Integration Strategy**: Plan integration of successful emergent agents into main collection
4. **Continuous Discovery**: Set up automated discovery for new combinations as scripts evolve

---

*Generated by Emergent Capability Discovery Engine*
*Exploring the space of possible agent combinations*
EOF
    
    echo "📄 Report saved: $report_file"
    
    # Display summary
    echo -e "\n${CYAN}📊 Discovery Summary:${NC}"
    echo "🔍 Scripts analyzed: $(find evolution dev-tools optimization memory -name "*.sh" 2>/dev/null | wc -l)"
    echo "🔄 Combinations discovered: $([ -f "$COMBINATIONS_DIR/discovered_combinations.json" ] && jq '.combinations | length' "$COMBINATIONS_DIR/discovered_combinations.json" || echo "0")"
    echo "🧪 Experiments run: $([ -f "$EXPERIMENTS_DIR/combination_experiments.json" ] && jq '.experiments_run | length' "$EXPERIMENTS_DIR/combination_experiments.json" || echo "0")"
    echo "🌟 Emergent capabilities: $([ -f "$EMERGENT_ARCHIVE/emergent_capabilities.json" ] && jq '.emergent_capabilities | length' "$EMERGENT_ARCHIVE/emergent_capabilities.json" || echo "0")"
    echo "🤖 Prototypes created: $(ls "$EMERGENT_ARCHIVE"/emergent_*.sh 2>/dev/null | wc -l)"
}

main "$@"