#!/usr/bin/bash

# 20230927

mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00731.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731/HG00731.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00731.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731/HG00731.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00731.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731/HG00731.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00731.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731/HG00731.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00731.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731/HG00731.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00731.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG00731/HG00731.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01596.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596/HG01596.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01596.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596/HG01596.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01596.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596/HG01596.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01596.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596/HG01596.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01596.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596/HG01596.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01596.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01596/HG01596.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01890.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890/HG01890.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01890.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890/HG01890.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01890.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890/HG01890.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01890.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890/HG01890.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01890.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890/HG01890.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG01890.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG01890/HG01890.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02011.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011/HG02011.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02011.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011/HG02011.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02011.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011/HG02011.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02011.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011/HG02011.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02011.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011/HG02011.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02011.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02011/HG02011.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02492.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492/HG02492.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02492.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492/HG02492.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02492.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492/HG02492.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02492.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492/HG02492.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02492.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492/HG02492.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG02492.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG02492/HG02492.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03009.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009/HG03009.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03009.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009/HG03009.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03009.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009/HG03009.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03009.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009/HG03009.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03009.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009/HG03009.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03009.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03009/HG03009.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03065.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065/HG03065.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03065.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065/HG03065.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/statistics/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/HG02492.vrk-ps-sseq/HG02492.vrk-ps-sseq.contaminants.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492/HG02492.vrk-ps-sseq.contaminants.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/HG03009.vrk-ps-sseq/HG03009.vrk-ps-sseq.asm-hap2.fasta.gz.gzi /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009/HG03009.vrk-ps-sseq.asm-hap2.fasta.gz.gzi
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03371
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03456
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/HG03732.vrk-ps-sseq/HG03732.vrk-ps-sseq.contaminants.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732/HG03732.vrk-ps-sseq.contaminants.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/NA18534.vrk-ps-sseq/NA18534.vrk-ps-sseq.asm-disconnected.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534/NA18534.vrk-ps-sseq.asm-disconnected.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/NA19650.vrk-ps-sseq/NA19650.vrk-ps-sseq.asm-hap2.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650/NA19650.vrk-ps-sseq.asm-hap2.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/NA19650.vrk-ps-sseq/NA19650.vrk-ps-sseq.asm-hap2.fasta.gz.fai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650/NA19650.vrk-ps-sseq.asm-hap2.fasta.gz.fai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA20847
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA24385
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA24385
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA24385
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/assemblies/NA24385
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/HG00731
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rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/NA24385.vrk-ps-sseq.asm-hap2.hg38.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385/NA24385.vrk-ps-sseq.asm-hap2.hg38.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/NA24385.vrk-ps-sseq.asm-unassigned.hg38.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385/NA24385.vrk-ps-sseq.asm-unassigned.hg38.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/NA24385.vrk-ps-sseq.asm-unassigned.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385/NA24385.vrk-ps-sseq.asm-unassigned.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/NA24385.vrk-ps-sseq.asm-unassigned.hg38.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/hg38/NA24385/NA24385.vrk-ps-sseq.asm-unassigned.hg38.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00731.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731/HG00731.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00731.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731/HG00731.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00731.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731/HG00731.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00731.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731/HG00731.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00731.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731/HG00731.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG00731
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01596.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596/HG01596.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01596
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG01890.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG01890/HG01890.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG02011.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011/HG02011.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02011
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG02492
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03009.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009/HG03009.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03009
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03065.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065/HG03065.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03065
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03371.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03371/HG03371.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03456.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03456/HG03456.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18534.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534/NA18534.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18534.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534/NA18534.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18534.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534/NA18534.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18534.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534/NA18534.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18534.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534/NA18534.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18534.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534/NA18534.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA18534
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19650.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650/NA19650.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19650
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19705.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705/NA19705.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19705.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705/NA19705.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA19705
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20509
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20847
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20847
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20847
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/alignments/contig_to_ref/t2tv2/NA20847
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG02492
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/HG02492.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG02492/HG02492.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03009
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/HG03009.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03009/HG03009.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03065
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/HG03065.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03065/HG03065.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03371
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/HG03371.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03371/HG03371.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03456
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/HG03456.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03456/HG03456.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/HG03732.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/HG03732/HG03732.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA18534
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/NA18534.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA18534/NA18534.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA19650
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/NA19650.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA19650/NA19650.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA19705
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/NA19705.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA19705/NA19705.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA20509
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/NA20509.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA20509/NA20509.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA20847
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/NA20847.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA20847/NA20847.ps-sseq.verkko-dup-seq.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA24385
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/reports/seq_dedup/NA24385.ps-sseq.verkko-dup-seq.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20230927_verkko_batch2/reports/seq_dedup/NA24385/NA24385.ps-sseq.verkko-dup-seq.summary.tsv
