#!/usr/bin/bash

# 20240201

mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00096.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096/HG00096.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00096.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096/HG00096.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00096.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096/HG00096.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00096.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096/HG00096.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00096.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096/HG00096.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00096.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00096/HG00096.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00512.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512/HG00512.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00512.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512/HG00512.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00512.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512/HG00512.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00512.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512/HG00512.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00512.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512/HG00512.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00512.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00512/HG00512.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00513.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513/HG00513.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00513.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513/HG00513.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00513.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513/HG00513.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00513.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513/HG00513.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00513.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513/HG00513.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00513.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00513/HG00513.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00514.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514/HG00514.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00514.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514/HG00514.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00514.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514/HG00514.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00514.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514/HG00514.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00514.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514/HG00514.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00514.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00514/HG00514.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00732.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732/HG00732.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00732.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732/HG00732.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00732.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732/HG00732.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00732.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732/HG00732.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00732.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732/HG00732.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00732.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00732/HG00732.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00864.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864/HG00864.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00864.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864/HG00864.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00864.vrk-ps-sseq.asm-hap2.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864/HG00864.vrk-ps-sseq.asm-hap2.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00864.vrk-ps-sseq.asm-rdna.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864/HG00864.vrk-ps-sseq.asm-rdna.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00864.vrk-ps-sseq.asm-unassigned.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864/HG00864.vrk-ps-sseq.asm-unassigned.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG00864.vrk-ps-sseq.contaminants.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG00864/HG00864.vrk-ps-sseq.contaminants.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03732.vrk-ps-sseq.asm-disconnected.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/statistics/assemblies/HG03732.vrk-ps-sseq.asm-hap1.summary.tsv /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG03732/HG03732.vrk-ps-sseq.asm-hap1.summary.tsv
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/statistics/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/assemblies/HG00732.vrk-ps-sseq/HG00732.vrk-ps-sseq.asm-disconnected.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732/HG00732.vrk-ps-sseq.asm-disconnected.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00864
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00864
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00514.vrk-ps-sseq.asm-hap1.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514/HG00514.vrk-ps-sseq.asm-hap1.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00732.vrk-ps-sseq.asm-hap1.hg38.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732/HG00732.vrk-ps-sseq.asm-hap1.hg38.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00732.vrk-ps-sseq.asm-hap1.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732/HG00732.vrk-ps-sseq.asm-hap1.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00732.vrk-ps-sseq.asm-hap1.hg38.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732/HG00732.vrk-ps-sseq.asm-hap1.hg38.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00732.vrk-ps-sseq.asm-hap2.hg38.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732/HG00732.vrk-ps-sseq.asm-hap2.hg38.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00732.vrk-ps-sseq.asm-hap2.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732/HG00732.vrk-ps-sseq.asm-hap2.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00732.vrk-ps-sseq.asm-hap2.hg38.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732/HG00732.vrk-ps-sseq.asm-hap2.hg38.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00864.vrk-ps-sseq.asm-disconnected.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864/HG00864.vrk-ps-sseq.asm-disconnected.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00864.vrk-ps-sseq.asm-hap1.hg38.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864/HG00864.vrk-ps-sseq.asm-hap1.hg38.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/HG00864.vrk-ps-sseq.asm-hap1.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864/HG00864.vrk-ps-sseq.asm-hap1.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/HG00864
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/NA19240.vrk-ps-sseq.asm-unassigned.hg38.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19240/NA19240.vrk-ps-sseq.asm-unassigned.hg38.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/hg38/bam/NA19240.vrk-ps-sseq.asm-unassigned.hg38.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/hg38/NA19240/NA19240.vrk-ps-sseq.asm-unassigned.hg38.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00096.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00096/HG00096.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00512.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00512/HG00512.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00513.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00513/HG00513.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00514.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00514/HG00514.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00732.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00732/HG00732.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG00864.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG00864/HG00864.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/HG03732/HG03732.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA12329.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA12329/NA12329.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA18939.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA18939/NA18939.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-hap1.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-hap2.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-hap2.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-rdna.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-rdna.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-unassigned.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19238.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19238/NA19238.vrk-ps-sseq.asm-unassigned.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19239.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239/NA19239.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19239.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239/NA19239.vrk-ps-sseq.asm-disconnected.t2tv2.sort.bam.bai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19239.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239/NA19239.vrk-ps-sseq.asm-disconnected.t2tv2.unmapped.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/eval/wd/results/alignments/contig_to_ref/t2tv2/bam/NA19239.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239/NA19239.vrk-ps-sseq.asm-hap1.t2tv2.sort.bam
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/alignments/contig_to_ref/t2tv2/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/reports/seq_dedup/HG00096
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/reports/seq_dedup/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00514
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG00864
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/HG03732
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA12329
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA18939
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19238
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19239
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
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mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-ebv.fasta.gz.gzi /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-ebv.fasta.gz.gzi
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-mito.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-mito.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-mito.fasta.gz.fai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-mito.fasta.gz.fai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-mito.fasta.gz.gzi /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-mito.fasta.gz.gzi
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-rdna.fasta.gz /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-rdna.fasta.gz
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-rdna.fasta.gz.fai /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-rdna.fasta.gz.fai
mkdir -p /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240
rsync --progress --checksum /gpfs/project/projects/medbioinf/projects/assemblies/hybrids/verkko/wd/results/assemblies/verkko/NA19240.ps-sseq/NA19240.ps-sseq.exemplar-rdna.fasta.gz.gzi /gpfs/project/projects/medbioinf/data/00_RESTRUCTURE/shares/globus/outgoing/hgsvc/ebi_upload/20240201_verkko_batch3/assemblies/NA19240/NA19240.ps-sseq.exemplar-rdna.fasta.gz.gzi
