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path_to_pdb
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73
84
id
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4
7
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12 values
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1x3ka_.pdb
d1x3ka_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1x46a_.pdb
d1x46a_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2bk9a_.pdb
d2bk9a_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2ig3a_.pdb
d2ig3a_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2wtga_.pdb
d2wtga_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2wy4a_.pdb
d2wy4a_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2zs0a_.pdb
d2zs0a_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2zs0b_.pdb
d2zs0b_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2zs0c_.pdb
d2zs0c_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2zs0d_.pdb
d2zs0d_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1asha_.pdb
d1asha_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1cg5a_.pdb
d1cg5a_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1cg5b_.pdb
d1cg5b_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1ecaa_.pdb
d1ecaa_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1gcvb_.pdb
d1gcvb_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1h97a_.pdb
d1h97a_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1hlba_.pdb
d1hlba_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1it2a_.pdb
d1it2a_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1itha_.pdb
d1itha_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1jl7a_.pdb
d1jl7a_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1yj8a2.pdb
d1yj8a2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3ckya2.pdb
d3ckya2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3pdua2.pdb
d3pdua2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4im7a2.pdb
d4im7a2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4pzda2.pdb
d4pzda2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4ypoa2.pdb
d4ypoa2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d5je8a2.pdb
d5je8a2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d5y8ja2.pdb
d5y8ja2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d6hava2.pdb
d6hava2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d6pypa2.pdb
d6pypa2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1sgma2.pdb
d1sgma2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1t33a2.pdb
d1t33a2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2fbqa2.pdb
d2fbqa2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2fd5a2.pdb
d2fd5a2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2fq4a2.pdb
d2fq4a2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2hyja2.pdb
d2hyja2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2id3a2.pdb
d2id3a2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2xpwa2.pdb
d2xpwa2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2yvea2.pdb
d2yvea2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3br0a2.pdb
d3br0a2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2yyna_.pdb
d2yyna_
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3g0ja_.pdb
d3g0ja_
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3iu5a1.pdb
d3iu5a1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3k2ja1.pdb
d3k2ja1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3mqma1.pdb
d3mqma1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3nxba_.pdb
d3nxba_
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4nxja1.pdb
d4nxja1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4pkla1.pdb
d4pkla1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4qnsa1.pdb
d4qnsa1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4qspa1.pdb
d4qspa1
a.29.2.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1umma_.pdb
d1umma_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1w2la_.pdb
d1w2la_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2ce0a_.pdb
d2ce0a_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2zxya_.pdb
d2zxya_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3cu4a_.pdb
d3cu4a_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4aana1.pdb
d4aana1
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4aana2.pdb
d4aana2
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4eiea_.pdb
d4eiea_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4j20a_.pdb
d4j20a_
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d4xxla1.pdb
d4xxla1
a.3.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1b7ca_.pdb
d1b7ca_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1c52a_.pdb
d1c52a_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1cc5a_.pdb
d1cc5a_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1ctja_.pdb
d1ctja_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1dw0a_.pdb
d1dw0a_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1e29a_.pdb
d1e29a_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1gksa_.pdb
d1gksa_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1gu2a_.pdb
d1gu2a_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1ql3a_.pdb
d1ql3a_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1wvec_.pdb
d1wvec_
a.3.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2d5va2.pdb
d2d5va2
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2da1a1.pdb
d2da1a1
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2da3a1.pdb
d2da3a1
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2da5a1.pdb
d2da5a1
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2dmqa1.pdb
d2dmqa1
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2dn0a1.pdb
d2dn0a1
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2ltpa_.pdb
d2ltpa_
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2xsdc2.pdb
d2xsdc2
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2yuma1.pdb
d2yuma1
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3osga2.pdb
d3osga2
a.4.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1akha_.pdb
d1akha_
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1bw5a_.pdb
d1bw5a_
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1k61a_.pdb
d1k61a_
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1p7id_.pdb
d1p7id_
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1pufa_.pdb
d1pufa_
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1pufb_.pdb
d1pufb_
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1qrya1.pdb
d1qrya1
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1uhsa1.pdb
d1uhsa1
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1wh7a1.pdb
d1wh7a1
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1x2ma1.pdb
d1x2ma1
a.4.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2fd5a1.pdb
d2fd5a1
a.4.1.9
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2g7sa1.pdb
d2g7sa1
a.4.1.9
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2gfna1.pdb
d2gfna1
a.4.1.9
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2hkua1.pdb
d2hkua1
a.4.1.9
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d2hyja1.pdb
d2hyja1
a.4.1.9
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1x3ka_.pdb
d1x3ka_
a.1.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1asha_.pdb
d1asha_
a.1.1.2
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1yj8a2.pdb
d1yj8a2
a.100.1.0
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d1sgma2.pdb
d1sgma2
a.121.1.1
/home/nithinc/Workspace/cryo-drgn-fork/shared-data/scope/pdbs/d3nxba_.pdb
d3nxba_
a.29.2.0
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YAML Metadata Warning: empty or missing yaml metadata in repo card (https://huggingface.co/docs/hub/datasets-cards)

Datasets for Cryo-EM synthetic training

Existing datasets:

  • scope: collection of PDBs categorized from scope
  • tim-rossman: collection of tim and rossman PDBs

Dataset Structure:

{dataset}/
    - pdbs: all pdbs in the dataset
    - dataframes: different types of datasets (how many families, which pdbs selected, etc.). All paths are relative
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